Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 0.0e+00 1314.3 646 100.0
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.3e-266 922.9 696 68.8
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 8.6e-266 920.2 696 68.7
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 3.4e-254 881.7 666 68.0
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 3.8e-253 878.2 688 66.0
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 7.1e-252 874.0 674 65.9
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 6.0e-251 870.9 675 64.6
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 6.6e-250 867.5 649 68.6
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 2.6e-246 855.5 652 67.3
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 1.1e-244 850.1 643 68.3
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.6e-243 846.3 656 67.2
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 1.6e-243 846.3 676 64.9
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 1.1e-241 840.1 676 63.6
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 4.3e-241 838.2 654 65.1
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 9.6e-241 837.0 651 66.8
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 3.6e-240 835.1 676 63.9
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 4.8e-240 834.7 658 65.7
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.8e-239 832.8 666 64.7
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 6.9e-239 830.9 649 66.3
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 2.0e-238 829.3 654 66.2
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 4.5e-238 828.2 649 66.1
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 7.6e-238 827.4 649 66.9
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 2.2e-237 825.9 655 65.5
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 2.4e-236 822.4 668 64.5
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 4.2e-236 821.6 659 64.3
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 9.3e-236 820.5 664 64.8
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 1.2e-235 820.1 628 66.7
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 2.1e-235 819.3 652 64.6
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 4.6e-235 818.1 649 66.6
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 6.0e-235 817.8 669 64.6
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.0e-234 817.0 674 63.4
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 3.9e-234 815.1 649 65.3
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 8.7e-234 813.9 657 63.9
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 2.5e-233 812.4 668 63.6
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 4.3e-233 811.6 664 64.9
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.3e-232 810.1 648 64.8
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.3e-232 810.1 718 59.9
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 3.7e-232 808.5 724 59.5
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 2.4e-231 805.8 653 63.6
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 6.9e-231 804.3 687 61.0
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 9.0e-231 803.9 673 62.6
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.0e-230 802.7 688 61.2
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 2.6e-230 802.4 672 61.9
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.4e-230 802.0 658 62.9
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 7.6e-230 800.8 665 62.3
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 8.4e-229 797.3 704 59.5
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 1.4e-228 796.6 642 64.3
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.9e-228 796.2 666 61.6
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.2e-227 793.5 678 60.6
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 1.2e-227 793.5 654 64.2
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 2.7e-227 792.3 678 61.7
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 4.6e-227 791.6 616 66.4
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 8.7e-226 787.3 673 62.1
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 1.1e-225 786.9 666 61.3
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 1.6e-224 783.1 666 60.7
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.4e-223 780.0 644 63.4
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 1.8e-223 779.6 657 62.7
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 3.4e-222 775.4 637 62.0
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 5.8e-222 774.6 675 61.0
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 1.7e-221 773.1 644 62.7
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 5.0e-221 771.5 650 62.6
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 2.5e-220 769.2 642 62.0
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 5.5e-220 768.1 564 69.3
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 1.6e-219 766.5 655 61.4
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 2.1e-219 766.1 650 61.7
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 6.1e-219 764.6 683 61.1
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 5.1e-218 761.5 640 61.6
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 8.7e-218 760.8 647 61.7
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 5.7e-217 758.1 647 61.5
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 9.7e-217 757.3 619 62.8
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 1.3e-216 756.9 649 62.2
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 2.8e-216 755.7 748 56.3
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 3.7e-216 755.4 646 62.2
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 4.5e-214 748.4 638 61.1
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 3.8e-213 745.3 662 61.3
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 5.7e-209 731.5 655 59.8
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 6.3e-208 728.0 544 66.4
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 5.0e-205 718.4 627 58.9
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 8.5e-205 717.6 661 57.8
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 2.5e-204 716.1 623 61.3
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 1.5e-201 706.8 642 59.0
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 5.9e-198 694.9 662 55.3
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 7.4e-193 677.9 679 54.3
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 2.6e-177 626.3 649 53.8
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.1e-175 619.0 421 73.6
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 9.5e-172 607.8 449 68.4
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 7.5e-169 598.2 551 56.3
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 2.0e-166 590.1 692 47.3
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 4.6e-158 562.4 431 65.0
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 1.6e-155 553.9 714 45.9
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 1.9e-151 540.4 613 48.1
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.3e-149 534.3 392 70.2
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 3.9e-141 506.1 649 47.1
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 1.2e-134 484.6 462 56.1
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 4.8e-131 472.6 292 78.8
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 2.5e-124 450.3 501 46.5
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 3.6e-123 446.4 465 55.1
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 7.1e-111 405.6 557 42.7
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 7.2e-103 379.0 260 75.4
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 3.3e-100 370.2 470 45.7
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 4.1e-98 363.2 263 70.3
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 9.7e-92 342.0 254 70.9
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 1.4e-90 338.2 195 82.6
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.0e-88 332.0 413 48.7
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 2.5e-87 327.4 385 46.2
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 2.1e-86 324.3 672 33.0
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 6.7e-85 319.3 187 81.8
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 3.1e-82 310.5 471 38.9
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 8.5e-80 302.4 626 36.1
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 2.5e-79 300.8 174 84.5
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 6.7e-77 292.7 349 47.9
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 7.5e-76 289.3 349 47.9
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 1.7e-72 278.1 314 52.9
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 1.5e-71 275.0 187 74.9
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.9e-71 274.6 183 72.7
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 1.2e-70 271.9 150 82.7
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.3e-67 261.9 343 43.1
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 1.0e-64 252.3 363 40.5
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 7.5e-60 236.1 458 35.8
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 1.0e-53 215.7 130 77.7
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 8.0e-46 189.5 213 46.5
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 4.4e-44 183.7 208 51.4
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 5.6e-39 166.8 201 46.8
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 6.4e-35 153.3 207 43.5
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.7e-32 145.2 110 61.8
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 1.4e-26 125.6 209 36.8
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 3.2e-26 124.4 151 53.0
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 4.6e-25 120.6 110 53.6
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 1.3e-24 119.0 96 55.2
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 2.1e-17 95.1 82 57.3
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 2.5e-15 88.2 77 54.5
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 1.3e-14 85.9 55 80.0
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 2.1e-14 85.1 63 63.5
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 6.4e-11 73.6 200 33.5
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 1.4e-10 72.4 53 67.9
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 3.2e-10 71.2 72 50.0
Actinidia14170 Actinidia chinensis HOM05D005523 ORTHO05D026295 4.3e-07 60.8 82 43.9
Actinidia36736 Actinidia chinensis HOM05D005523 ORTHO05D026295 2.8e-06 58.2 53 50.9
SEGI_20523 Sequoiadendron giganteum HOM05D005523 ORTHO05D000001 2.8e-06 58.2 91 35.2
TAR633G1696 Trochodendron aralioides HOM05D000598 ORTHO05D007089 4.8e-06 57.4 87 37.9


User provided reference genes

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