Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 3.6e-83 311.6 168 100.0
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 4.6e-70 268.1 159 86.2
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 6.7e-69 264.2 159 83.6
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.5e-68 263.1 159 83.6
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 4.3e-68 261.5 158 84.2
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 4.3e-68 261.5 158 84.2
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.6e-67 259.6 159 82.4
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 8.2e-67 257.3 159 81.1
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.1e-66 256.9 159 81.1
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.1e-66 256.9 159 81.1
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 1.1e-66 256.9 159 83.0
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.4e-66 256.5 159 81.1
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.4e-66 256.5 159 81.1
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 1.4e-66 256.5 159 81.1
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 2.4e-66 255.8 159 81.1
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 3.1e-66 255.4 159 86.2
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 5.3e-66 254.6 159 85.5
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.3e-66 254.6 159 85.5
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 5.3e-66 254.6 159 81.1
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 6.9e-66 254.2 159 81.1
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 6.9e-66 254.2 159 81.1
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 9.0e-66 253.8 159 81.1
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 9.0e-66 253.8 159 85.5
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 1.2e-65 253.4 159 81.1
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.2e-65 253.4 159 78.6
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.5e-65 253.1 159 81.1
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.5e-65 253.1 159 80.5
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.5e-65 253.1 159 79.9
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 2.0e-65 252.7 159 85.5
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.0e-65 252.7 159 79.9
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 2.0e-65 252.7 159 79.2
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 2.0e-65 252.7 159 81.8
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 2.6e-65 252.3 159 81.8
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 3.4e-65 251.9 159 81.1
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 3.4e-65 251.9 159 79.2
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.5e-65 251.5 159 84.9
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 5.9e-65 251.1 159 79.9
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.0e-64 250.4 159 79.2
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.3e-64 250.0 159 80.5
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.3e-64 250.0 159 80.5
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.7e-64 249.6 159 78.6
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.2e-64 249.2 159 81.8
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 2.9e-64 248.8 159 81.1
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 3.8e-64 248.4 159 79.9
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 3.8e-64 248.4 159 79.9
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 6.5e-64 247.7 158 81.0
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 8.4e-64 247.3 159 83.6
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 8.4e-64 247.3 159 83.6
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.1e-63 246.9 158 83.5
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.1e-63 246.9 159 84.3
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-63 246.5 159 81.1
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 4.2e-63 245.0 159 81.1
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 4.2e-63 245.0 159 79.2
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 5.5e-63 244.6 159 83.0
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 7.2e-63 244.2 159 78.0
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 7.2e-63 244.2 159 78.0
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.6e-62 243.0 159 76.7
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.6e-62 243.0 159 79.9
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.1e-62 242.7 159 83.0
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.7e-62 242.3 159 77.4
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 4.6e-62 241.5 159 78.0
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 7.9e-62 240.7 159 76.7
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 7.9e-62 240.7 159 76.7
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 1.0e-61 240.4 159 76.1
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.8e-61 239.6 159 78.6
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.8e-61 239.6 159 78.6
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 1.8e-61 239.6 159 74.8
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 6.7e-61 237.7 160 77.5
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 5.7e-60 234.6 159 74.2
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 5.7e-60 234.6 159 74.2
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 7.4e-60 234.2 159 72.3
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 7.4e-60 234.2 159 74.2
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 7.4e-60 234.2 159 74.2
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 7.4e-60 234.2 159 74.2
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 7.4e-60 234.2 159 74.2
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 9.7e-60 233.8 159 81.1
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 1.3e-59 233.4 159 77.4
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.3e-59 233.4 159 74.2
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.3e-59 233.4 159 72.3
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 2.2e-59 232.6 159 75.5
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.2e-59 232.6 159 74.2
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 2.2e-59 232.6 159 74.2
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 2.8e-59 232.3 159 80.5
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 3.7e-59 231.9 159 74.2
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.1e-58 230.3 159 73.0
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 3.1e-58 228.8 159 72.3
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 3.1e-58 228.8 159 73.0
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 9.0e-58 227.3 159 72.3
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.2e-57 226.9 159 76.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.5e-57 226.5 159 72.3
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 3.8e-56 221.9 159 69.8
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.5e-56 220.7 159 72.3
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.9e-55 219.5 159 69.2
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 5.5e-55 218.0 159 67.9
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 7.2e-55 217.6 139 79.1
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 7.2e-55 217.6 159 67.9
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 2.7e-54 215.7 160 67.5
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 3.0e-53 212.2 159 70.4
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 6.7e-53 211.1 159 65.4
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 6.7e-53 211.1 159 70.4
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 3.3e-52 208.8 159 64.8
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 7.4e-52 207.6 159 64.8
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 4.1e-50 201.8 168 61.3
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 5.3e-50 201.4 159 62.9
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 7.7e-49 197.6 153 68.6
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 8.5e-48 194.1 124 81.5
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.4e-47 193.4 159 66.0
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.2e-46 190.3 159 63.5
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.6e-46 189.9 151 67.5
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 5.3e-42 174.9 140 67.1
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 9.1e-42 174.1 170 54.1
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 5.2e-37 158.3 143 59.4
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 4.1e-34 148.7 153 56.2
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 9.1e-34 147.5 159 52.2
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.2e-30 137.1 158 53.8
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.8e-29 133.3 159 50.9
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 7.5e-28 127.9 190 41.6
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 1.3e-27 127.1 80 81.2
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 2.8e-27 125.9 150 42.7
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.4e-26 123.6 91 73.6
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 6.1e-22 108.2 86 66.3
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.6e-20 102.8 62 83.9
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.6e-20 102.8 62 83.9
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.8e-18 96.7 74 66.2
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.0e-16 90.9 69 75.4
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 1.1e-15 87.4 60 70.0
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.6e-14 83.6 150 39.3
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 4.0e-13 79.0 91 57.1
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.6e-12 76.3 159 32.1
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 4.9e-11 72.0 150 32.0
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 1.0e-08 64.3 32 90.6
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 3.0e-08 62.8 60 55.0
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 5.0e-08 62.0 70 51.4
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 1.2e-06 57.4 26 88.5


User provided reference genes

Program Settings