Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011936001 Vitis vinifera HOM05D003846 ORTHO05D004726 8.7e-69 263.5 128 100.0
Atru.chr11.1333 Acer truncatum HOM05D003846 ORTHO05D004726 1.9e-55 219.2 158 70.9
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 1.9e-55 219.2 159 71.1
TAR622G0464 Trochodendron aralioides HOM05D003846 ORTHO05D004726 1.9e-55 219.2 159 71.1
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 3.3e-52 208.4 159 69.2
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 2.8e-51 205.3 159 68.6
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 4.8e-51 204.5 158 69.0
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 6.2e-51 204.1 160 66.9
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 8.2e-51 203.8 160 65.6
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.1e-50 203.4 161 65.2
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.4e-50 203.0 159 67.3
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 1.8e-50 202.6 160 68.1
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 2.4e-50 202.2 159 64.8
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 3.1e-50 201.8 160 68.1
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 6.9e-50 200.7 159 66.7
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 9.0e-50 200.3 158 66.5
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 1.2e-49 199.9 158 67.7
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 1.2e-49 199.9 157 66.2
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 1.5e-49 199.5 159 66.0
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 2.0e-49 199.1 159 64.2
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 2.0e-49 199.1 159 66.0
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 4.5e-49 198.0 158 65.2
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.5e-49 198.0 159 65.4
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 7.6e-49 197.2 159 66.0
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.0e-48 196.8 159 64.8
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 1.3e-48 196.4 158 66.5
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 2.9e-48 195.3 160 63.8
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 2.9e-48 195.3 159 64.8
PSO063G1115 Papaver somniferum HOM05D003846 ORTHO05D004726 3.8e-48 194.9 161 65.8
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 5.0e-48 194.5 160 63.8
PSO782G3649 Papaver somniferum HOM05D003846 ORTHO05D004726 5.0e-48 194.5 161 65.2
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 8.4e-48 193.7 159 65.4
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 8.4e-48 193.7 159 65.4
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 8.4e-48 193.7 159 62.9
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 1.1e-47 193.4 159 64.8
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.4e-47 193.0 159 62.9
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 2.5e-47 192.2 159 64.2
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 2.5e-47 192.2 159 62.9
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 3.2e-47 191.8 159 62.9
RcHm_v2.0_Chr4g0435651 Rosa chinensis HOM05D003846 ORTHO05D004726 4.2e-47 191.4 158 63.3
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 9.3e-47 190.3 159 62.9
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 9.3e-47 190.3 161 62.1
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 9.3e-47 190.3 159 64.2
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 9.3e-47 190.3 159 64.2
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 1.2e-46 189.9 159 62.9
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.2e-46 189.9 159 63.5
EL10Ac6g14463 Beta vulgaris HOM05D003846 ORTHO05D004726 1.6e-46 189.5 158 60.8
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 1.6e-46 189.5 159 62.9
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 1.6e-46 189.5 159 62.9
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 1.6e-46 189.5 160 61.9
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 2.7e-46 188.7 159 63.5
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 3.5e-46 188.3 159 63.5
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 3.5e-46 188.3 159 62.9
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 4.6e-46 188.0 159 64.8
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 1.0e-45 186.8 159 64.8
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 1.3e-45 186.4 160 61.9
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 1.8e-45 186.0 159 63.5
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 2.3e-45 185.7 159 62.3
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 2.3e-45 185.7 158 62.7
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 3.9e-45 184.9 159 63.5
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 3.9e-45 184.9 159 64.2
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 5.1e-45 184.5 159 63.5
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 8.7e-45 183.7 162 61.7
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 8.7e-45 183.7 162 61.7
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 8.7e-45 183.7 158 61.4
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.9e-44 182.6 159 61.6
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 2.5e-44 182.2 162 61.1
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 3.3e-44 181.8 159 61.6
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 4.3e-44 181.4 160 61.2
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 5.7e-44 181.0 159 62.3
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 5.7e-44 181.0 159 62.3
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 5.7e-44 181.0 159 62.3
arahy.Tifrunner.gnm1.ann1.6C9V7B Arachis hypogaea HOM05D003846 ORTHO05D004726 9.7e-44 180.3 159 61.6
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.3e-43 179.9 159 61.6
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 1.3e-43 179.9 162 61.1
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 1.3e-43 179.9 160 61.9
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.6e-43 179.5 160 62.5
HPP92_016307 Vanilla planifolia HOM05D003846 ORTHO05D004726 3.7e-43 178.3 158 61.4
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 4.8e-43 177.9 159 61.0
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 4.8e-43 177.9 159 61.6
HPP92_016288 Vanilla planifolia HOM05D003846 ORTHO05D004726 6.3e-43 177.6 158 61.4
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 1.1e-42 176.8 159 61.0
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 1.4e-42 176.4 159 63.5
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 1.4e-42 176.4 157 60.5
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 1.4e-42 176.4 159 62.3
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 1.8e-42 176.0 159 61.0
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 3.1e-42 175.3 159 59.7
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 9.0e-42 173.7 158 60.1
Prupe.5G218600 Prunus persica HOM05D003846 ORTHO05D004726 9.0e-42 173.7 157 61.1
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 2.0e-41 172.6 160 61.2
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 2.0e-41 172.6 160 61.2
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 2.0e-41 172.6 159 59.7
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 3.4e-41 171.8 182 54.9
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 1.0e-40 170.2 159 58.5
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 1.7e-40 169.5 131 67.2
Sed0009794 Sechium edule HOM05D003846 ORTHO05D004726 1.7e-40 169.5 158 60.1
CDE11G1133 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 5.0e-40 167.9 161 57.1
MD14G1223300 Malus domestica HOM05D003846 ORTHO05D004726 6.5e-40 167.5 157 58.6
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 6.5e-40 167.5 165 58.2
SEGI_01063 Sequoiadendron giganteum HOM05D003846 ORTHO05D004726 1.1e-39 166.8 159 56.6
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 1.9e-39 166.0 159 57.2
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 2.5e-39 165.6 132 65.2
RcHm_v2.0_Chr7g0184811 Rosa chinensis HOM05D003846 ORTHO05D004726 5.5e-39 164.5 157 58.0
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 5.5e-39 164.5 165 58.2
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 7.2e-39 164.1 160 58.1
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 1.2e-38 163.3 139 61.9
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 2.7e-38 162.2 158 58.2
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 2.7e-38 162.2 160 56.2
FvH4_5g12540 Fragaria vesca HOM05D003846 ORTHO05D004726 3.6e-38 161.8 157 56.1
FAN04G0089 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.6e-38 161.8 157 56.1
FAN18G2095 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.6e-38 161.8 157 56.1
FAN18G2723 Fragaria x ananassa HOM05D003846 ORTHO05D004726 3.6e-38 161.8 157 56.1
FAN08G1200 Fragaria x ananassa HOM05D003846 ORTHO05D004726 4.6e-38 161.4 157 55.4
Psat2g088560 Pisum sativum HOM05D003846 ORTHO05D004726 4.6e-38 161.4 139 61.9
Sed0022338 Sechium edule HOM05D003846 ORTHO05D004726 7.9e-38 160.6 160 58.1
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 1.0e-37 160.2 159 58.5
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 1.0e-37 160.2 159 58.5
FAN13G1296 Fragaria x ananassa HOM05D003846 ORTHO05D004726 1.4e-37 159.8 157 55.4
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 1.1e-36 156.8 139 60.4
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 2.0e-36 156.0 141 60.3
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 4.3e-36 154.8 162 54.9
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 4.3e-36 154.8 159 56.0
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 9.7e-36 153.7 160 56.9
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 9.7e-36 153.7 159 56.6
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 1.7e-35 152.9 160 53.8
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 1.7e-35 152.9 160 53.8
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 1.7e-35 152.9 139 59.0
BcaC08g45948 Brassica carinata HOM05D003846 ORTHO05D004726 2.2e-35 152.5 145 58.6
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 2.8e-35 152.1 121 68.6
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 1.1e-34 150.2 129 62.8
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 1.4e-34 149.8 160 53.8
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 1.8e-34 149.4 147 57.8
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 2.4e-34 149.1 164 51.2
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 2.4e-34 149.1 139 59.7
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 5.3e-34 147.9 213 44.1
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 9.1e-34 147.1 121 65.3
Medtr6g085050 Medicago truncatula HOM05D003846 ORTHO05D004726 1.2e-33 146.7 150 58.0
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 2.6e-33 145.6 164 51.2
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 3.4e-33 145.2 135 59.3
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 3.4e-33 145.2 121 65.3
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 5.9e-33 144.4 121 63.6
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.7e-32 142.9 121 62.8
Psat1g039320 Pisum sativum HOM05D003846 ORTHO05D004726 5.0e-32 141.4 151 55.0
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 1.1e-31 140.2 146 57.5
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 1.9e-31 139.4 164 49.4
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 3.2e-31 138.7 121 61.2
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 5.5e-31 137.9 135 54.8
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 2.1e-30 136.0 135 54.8
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 2.1e-30 136.0 140 55.0
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 2.3e-29 132.5 119 58.0
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 7.4e-28 127.5 117 60.7
SGA_v2.0_scaffold63G21786 Striga asiatica HOM05D003846 ORTHO05D004726 7.4e-28 127.5 120 56.7
Pp3c10_21560 Physcomitrium patens HOM05D003846 ORTHO05D004726 1.1e-26 123.6 114 57.9
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 5.9e-25 117.9 109 57.8
Pp3c20_21920 Physcomitrium patens HOM05D003846 ORTHO05D004726 1.0e-24 117.1 111 55.0
Nn4g23759 Nelumbo nucifera HOM05D003846 ORTHO05D004726 5.2e-21 104.8 72 70.8
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-20 103.6 85 65.9
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-20 103.6 85 65.9
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.5e-20 103.2 82 67.1
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.5e-20 103.2 82 67.1
CBR_g40856 Chara braunii HOM05D003846 ORTHO05D004726 4.4e-20 101.7 118 49.2
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 9.7e-20 100.5 85 64.7
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 2.2e-19 99.4 89 60.7
Lsat_1_v5_gn_4_145001 Lactuca sativa HOM05D003846 ORTHO05D004726 8.2e-19 97.4 52 84.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 8.2e-19 97.4 52 86.5
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 8.2e-19 97.4 88 62.5
CsaV3_5G034070 Cucumis sativus L. HOM05D000040 ORTHO05D000759 4.5e-17 91.7 78 64.1
DCAR_011545 Daucus carota HOM05D003846 ORTHO05D004726 7.7e-17 90.9 83 59.0
CDE05G0888 Ceratophyllum demersum HOM05D003846 ORTHO05D004726 1.1e-15 87.0 116 43.1
PRCOL_00003868 Prasinoderma coloniale HOM05D003846 ORTHO05D004726 7.2e-15 84.3 119 45.4
HPP92_027194 Vanilla planifolia HOM05D003846 ORTHO05D004726 6.1e-14 81.3 142 38.0
Manes.11G040441 Manihot esculenta HOM05D000085 ORTHO05D249439 3.1e-10 68.9 95 41.1
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 2.0e-09 66.2 128 35.9
Manes.11G039928 Manihot esculenta HOM05D000085 ORTHO05D250131 5.9e-09 64.7 86 43.0
Manes.11G040408 Manihot esculenta HOM05D003846 ORTHO05D004726 1.0e-08 63.9 88 42.0
TPR.G20310 Trifolium pratense HOM05D003846 ORTHO05D004726 6.5e-08 61.2 34 82.4
Aa31sc562G10 Aethionema arabicum HOM05D003846 ORTHO05D004726 9.4e-07 57.4 98 35.7
VMungo0647G0777 Vigna mungo HOM05D003846 ORTHO05D007321 2.1e-06 56.2 47 61.7


User provided reference genes

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