Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011866001 Vitis vinifera HOM05D000072 ORTHO05D019415 8.6e-173 610.1 292 100.0
Manes.14G105100 Manihot esculenta HOM05D000072 ORTHO05D000026 2.3e-53 213.4 287 43.9
GSVIVG01011865001 Vitis vinifera HOM05D000072 ORTHO05D019415 3.1e-53 213.0 202 58.9
Duzib248G1206 Durio zibethinus HOM05D000072 ORTHO05D000026 6.8e-53 211.8 287 44.3
PGR102G2179 Punica granatum HOM05D000072 ORTHO05D000026 6.0e-49 198.7 290 45.5
Ciclev10014548m.g Citrus clementina HOM05D000072 ORTHO05D000026 7.8e-49 198.4 291 40.5
Dinv30536 Davidia involucrata HOM05D000072 ORTHO05D000026 7.8e-49 198.4 283 44.5
Nn4g23907 Nelumbo nucifera HOM05D000072 ORTHO05D000026 2.5e-47 193.4 274 41.6
vmacro10579 Vaccinium macrocarpon HOM05D000072 ORTHO05D019415 2.5e-47 193.4 258 42.6
COL.COLO4_33045 Corchorus olitorius HOM05D000072 ORTHO05D019415 6.2e-46 188.7 277 43.7
Gohir.D06G078901 Gossypium hirsutum HOM05D000072 ORTHO05D000026 2.4e-45 186.8 292 38.7
Gorai.010G092000 Gossypium raimondii HOM05D000072 ORTHO05D019415 8.9e-45 184.9 289 38.4
Eucgr.B02997 Eucalyptus grandis HOM05D000072 ORTHO05D019415 5.4e-42 175.6 279 37.6
Rhsim09G0105300 Rhododendron simsii HOM05D000072 ORTHO05D000026 7.1e-42 175.3 262 40.8
Actinidia16673 Actinidia chinensis HOM05D000072 ORTHO05D000026 1.6e-38 164.1 286 37.8
Atru.chr11.159 Acer truncatum HOM05D000072 ORTHO05D019415 3.6e-38 162.9 284 38.0
Eucgr.B02996 Eucalyptus grandis HOM05D000072 ORTHO05D000026 1.9e-31 140.6 277 34.3
MBI16_g13190_MAGBIO Magnolia biondii HOM05D000072 ORTHO05D000026 6.7e-24 115.5 278 32.4
Lj5g0001414 Lotus japonicus HOM05D000072 ORTHO05D000026 8.2e-14 82.0 285 29.1
CAN.G625.46 Capsicum annuum HOM05D000260 ORTHO05D000318 1.5e-12 77.8 274 26.3
Sc06g0006900 Simmondsia chinensis HOM05D000260 ORTHO05D000318 2.6e-12 77.0 290 24.5
Actinidia38367 Actinidia chinensis HOM05D000260 ORTHO05D000318 7.6e-12 75.5 282 27.3
CiPaw.16G088300 Carya illinoinensis HOM05D000260 ORTHO05D000318 1.7e-11 74.3 291 25.4
TAR371G0639 Trochodendron aralioides HOM05D000072 ORTHO05D000026 2.2e-11 73.9 289 28.0
arahy.Tifrunner.gnm1.ann1.Z64X3Y Arachis hypogaea HOM05D000072 ORTHO05D000026 2.9e-11 73.6 259 25.9
Eucgr.B00768 Eucalyptus grandis HOM05D000260 ORTHO05D000318 3.8e-11 73.2 261 27.2
RcHm_v2.0_Chr7g0186001 Rosa chinensis HOM05D000260 ORTHO05D000318 1.9e-10 70.9 286 26.2
Lj5g0005478 Lotus japonicus HOM05D000260 ORTHO05D000318 2.5e-10 70.5 285 26.3
Nitab4.5_0003652g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 2.5e-10 70.5 285 23.9
Sabra17G0097500 Salix brachista HOM05D000260 ORTHO05D000318 2.5e-10 70.5 267 25.5
FAN08G3342 Fragaria x ananassa HOM05D000260 ORTHO05D000318 3.2e-10 70.1 270 24.8
Lj3A880G112 Lonicera japonica HOM05D000260 ORTHO05D010362 3.2e-10 70.1 289 22.1
Thecc.02G223200 Theobroma cacao HOM05D000260 ORTHO05D000318 4.2e-10 69.7 292 24.3
Lsat_1_v5_gn_8_143900 Lactuca sativa HOM05D000260 ORTHO05D004405 5.5e-10 69.3 286 26.9
CSS0023814 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 9.3e-10 68.6 273 25.6
Eucgr.B00759 Eucalyptus grandis HOM05D000260 ORTHO05D000318 9.3e-10 68.6 258 26.0
Lsat_1_v5_gn_0_19021 Lactuca sativa HOM05D000072 ORTHO05D000026 9.3e-10 68.6 304 25.7
COL.COLO4_09357 Corchorus olitorius HOM05D000464 ORTHO05D000408 1.2e-09 68.2 283 25.4
TAR629G2462 Trochodendron aralioides HOM05D000072 ORTHO05D000026 1.2e-09 68.2 45 64.4
FAN12G3163 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.6e-09 67.8 281 25.6
Potri.017G116900 Populus trichocarpa HOM05D000072 ORTHO05D000026 1.6e-09 67.8 292 25.3
TWI75G1721 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 2.7e-09 67.0 271 25.5
arahy.Tifrunner.gnm1.ann1.2U2D57 Arachis hypogaea HOM05D000072 ORTHO05D000026 4.6e-09 66.2 260 25.8
CSS0010175 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 4.6e-09 66.2 272 25.4
Psat1g036000 Pisum sativum HOM05D000260 ORTHO05D000318 4.6e-09 66.2 280 25.4
Ah.01g016910 Amaranthus hybridus HOM05D000072 ORTHO05D000026 6.1e-09 65.9 261 23.4
Dinv31610 Davidia involucrata HOM05D000260 ORTHO05D010362 1.0e-08 65.1 270 24.8
CSS0035733 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 1.8e-08 64.3 276 24.3
Cfa019742 Carpinus fangiana HOM05D000260 ORTHO05D000318 1.8e-08 64.3 298 25.2
Lj2g0017271 Lotus japonicus HOM05D000072 ORTHO05D000026 1.8e-08 64.3 291 22.0
TWI74G0852 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 1.8e-08 64.3 296 24.7
QL06p012226 Quercus lobata HOM05D000260 ORTHO05D004405 2.3e-08 63.9 280 26.8
Migut.L01033 Erythranthe guttata HOM05D000260 ORTHO05D004405 3.0e-08 63.5 282 24.1
Sc14g0007350 Simmondsia chinensis HOM05D000260 ORTHO05D000318 3.0e-08 63.5 294 23.8
Haze_18720 Corylus avellana HOM05D000260 ORTHO05D004405 3.9e-08 63.2 296 24.3
FAN04G0174 Fragaria x ananassa HOM05D000260 ORTHO05D000318 3.9e-08 63.2 277 24.9
Ah.02g114960 Amaranthus hybridus HOM05D000260 ORTHO05D000318 5.1e-08 62.8 286 24.8
TWI31G0956 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 5.1e-08 62.8 283 24.0
EL10Ac5g11479 Beta vulgaris HOM05D000260 ORTHO05D000318 6.7e-08 62.4 305 24.3
Glyma.19G073400 Glycine max HOM05D000260 ORTHO05D004405 6.7e-08 62.4 296 24.3
COL.COLO4_10869 Corchorus olitorius HOM05D000260 ORTHO05D004405 8.7e-08 62.0 295 25.4
vmacro01395 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 8.7e-08 62.0 285 23.2
Nn4g23934 Nelumbo nucifera HOM05D000260 ORTHO05D000318 1.1e-07 61.6 282 25.5
Psat1g036040 Pisum sativum HOM05D000072 ORTHO05D000026 1.1e-07 61.6 281 24.9
FAN07G1554 Fragaria x ananassa HOM05D000260 ORTHO05D004405 1.5e-07 61.2 284 26.1
Gorai.002G052200 Gossypium raimondii HOM05D000072 ORTHO05D000026 1.5e-07 61.2 302 23.5
Lalb_Chr06g0165871 Lupinus albus HOM05D000260 ORTHO05D004405 1.5e-07 61.2 273 22.7
Eucgr.B00758 Eucalyptus grandis HOM05D000260 ORTHO05D000318 1.9e-07 60.8 265 22.6
Eucgr.L03194 Eucalyptus grandis HOM05D000260 ORTHO05D000318 2.5e-07 60.5 284 24.6
FvH4_4g26961 Fragaria vesca HOM05D000072 ORTHO05D000026 2.5e-07 60.5 283 25.1
PGSC0003DMG400005730 Solanum tuberosum HOM05D000072 ORTHO05D000026 2.5e-07 60.5 270 23.0
Oeu027004.1 Olea europaea HOM05D000260 ORTHO05D000318 3.3e-07 60.1 282 22.0
TPR.G4871 Trifolium pratense HOM05D000260 ORTHO05D004405 4.3e-07 59.7 288 25.0
SalBow8G1428 Salvia bowleyana HOM05D008908 ORTHO05D010362 5.7e-07 59.3 241 25.3
Aqoxy6G00363 Aquilegia oxysepala HOM05D018088 ORTHO05D019685 7.4e-07 58.9 303 23.8
MSTRG.3542 Avicennia marina HOM05D000260 ORTHO05D000318 7.4e-07 58.9 285 26.3
CDE12G0253 Ceratophyllum demersum HOM05D000260 ORTHO05D000318 9.7e-07 58.5 298 24.2
FAN17G2038 Fragaria x ananassa HOM05D000260 ORTHO05D000318 9.7e-07 58.5 288 25.3
TWI60G0982 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 9.7e-07 58.5 295 23.1
Duzib213G0625 Durio zibethinus HOM05D000072 ORTHO05D000026 1.3e-06 58.2 282 23.8
arahy.Tifrunner.gnm1.ann1.NYD0D7 Arachis hypogaea HOM05D000260 ORTHO05D004405 1.6e-06 57.8 259 24.3
Glyma.20G120250 Glycine max HOM05D000260 ORTHO05D004405 2.2e-06 57.4 286 23.8
arahy.Tifrunner.gnm1.ann1.JH9VB6 Arachis hypogaea HOM05D000260 ORTHO05D000318 2.8e-06 57.0 290 23.4
MSTRG.2220 Avicennia marina HOM05D000260 ORTHO05D000318 2.8e-06 57.0 267 25.5
Gohir.A01G052200 Gossypium hirsutum HOM05D000072 ORTHO05D000026 2.8e-06 57.0 284 22.9
Gohir.D01G041600 Gossypium hirsutum HOM05D000072 ORTHO05D000026 2.8e-06 57.0 302 23.2
Oeu057746.1 Olea europaea HOM05D000260 ORTHO05D000318 2.8e-06 57.0 255 25.5
arahy.Tifrunner.gnm1.ann1.Y6H081 Arachis hypogaea HOM05D000260 ORTHO05D000318 3.7e-06 56.6 290 23.4
FAN22G2291 Fragaria x ananassa HOM05D000260 ORTHO05D004405 3.7e-06 56.6 285 24.2
Lj2g0001936 Lotus japonicus HOM05D000260 ORTHO05D000318 4.8e-06 56.2 279 24.4
Ciclev10016284m.g Citrus clementina HOM05D000260 ORTHO05D004405 6.3e-06 55.8 287 24.0
FAN07G2609 Fragaria x ananassa HOM05D000072 ORTHO05D022715 6.3e-06 55.8 264 24.2


User provided reference genes

Program Settings