Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011779001 Vitis vinifera HOM05D000424 ORTHO05D000355 1.5e-89 333.2 216 100.0
Cc07_g19510 Coffea canephora HOM05D000424 ORTHO05D000355 1.5e-17 94.0 108 81.5
QL01p002086 Quercus lobata HOM05D000424 ORTHO05D000355 1.5e-17 94.0 106 83.0
Dinv13001 Davidia involucrata HOM05D000424 ORTHO05D000355 7.6e-17 91.7 106 84.9
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.2e-16 90.1 108 81.5
Cfa008586 Carpinus fangiana HOM05D000424 ORTHO05D000355 3.8e-16 89.4 108 82.4
Lj3P875T45 Lonicera japonica HOM05D000424 ORTHO05D000355 2.5e-15 86.7 107 77.6
RcHm_v2.0_Chr4g0440971 Rosa chinensis HOM05D000424 ORTHO05D000355 3.2e-15 86.3 42 92.9
CiPaw.06G013000 Carya illinoinensis HOM05D000424 ORTHO05D000355 4.2e-15 85.9 107 72.9
Atru.chr11.408 Acer truncatum HOM05D000424 ORTHO05D000355 7.1e-15 85.1 107 75.7
CSS0031805 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 7.1e-15 85.1 108 79.6
CSS0041366 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 7.1e-15 85.1 108 79.6
PGR119G1028 Punica granatum HOM05D000424 ORTHO05D000355 7.1e-15 85.1 44 81.8
CAN.G1334.16 Capsicum annuum HOM05D000424 ORTHO05D000355 1.6e-14 84.0 45 82.2
ClCG01G006140 Citrullus lanatus HOM05D000424 ORTHO05D000355 2.1e-14 83.6 108 73.1
Duzib268G1678 Durio zibethinus HOM05D000424 ORTHO05D000355 2.7e-14 83.2 44 84.1
CARHR064350 Cardamine hirsuta HOM05D000424 ORTHO05D000355 3.5e-14 82.8 108 77.8
MD13G1027000 Malus domestica HOM05D000424 ORTHO05D000355 3.5e-14 82.8 107 76.6
Sed0016159 Sechium edule HOM05D000424 ORTHO05D000355 3.5e-14 82.8 113 69.0
BcaC03g15265 Brassica carinata HOM05D000424 ORTHO05D000355 1.3e-13 80.9 108 77.8
C02p28580 Brassica napus HOM05D000424 ORTHO05D000355 1.3e-13 80.9 108 77.8
BolC2t08902H Brassica oleracea HOM05D000424 ORTHO05D000355 1.3e-13 80.9 108 77.8
Carub.0002s1787 Capsella rubella HOM05D000424 ORTHO05D000355 1.3e-13 80.9 108 77.8
TWI79G0176 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 1.3e-13 80.9 39 87.2
Lsat_1_v5_gn_4_15340 Lactuca sativa HOM05D000424 ORTHO05D000355 1.8e-13 80.5 108 69.4
Glyma.20G125900 Glycine max HOM05D000424 ORTHO05D000355 2.3e-13 80.1 49 71.4
Sc04g0005770 Simmondsia chinensis HOM05D000424 ORTHO05D000355 2.3e-13 80.1 108 76.9
Actinidia33408 Actinidia chinensis HOM05D000424 ORTHO05D000355 3.0e-13 79.7 40 87.5
AL2G30640 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 3.0e-13 79.7 41 80.5
Prupe.1G322900 Prunus persica HOM05D000424 ORTHO05D000355 3.0e-13 79.7 40 87.5
BcaB05g24640 Brassica carinata HOM05D000424 ORTHO05D000355 3.9e-13 79.3 40 82.5
A02p17130 Brassica napus HOM05D000424 ORTHO05D000355 3.9e-13 79.3 40 82.5
BraA02t06760Z Brassica rapa HOM05D000424 ORTHO05D000355 3.9e-13 79.3 40 82.5
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 3.9e-13 79.3 39 87.2
Peaxi162Scf00205g00026 Petunia axillaris HOM05D000424 ORTHO05D000355 5.1e-13 79.0 39 84.6
CANSAT01G3162 Cannabis sativa HOM05D000424 ORTHO05D000355 8.7e-13 78.2 40 82.5
Cpa.g.sc65.121 Carica papaya HOM05D000424 ORTHO05D000355 1.1e-12 77.8 39 84.6
vmacro00421 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 1.1e-12 77.8 108 75.0
TWI79G1119 Tripterygium wilfordii HOM05D005362 ORTHO05D000355 1.5e-12 77.4 38 84.2
CAN.G1693.17 Capsicum annuum HOM05D000424 ORTHO05D000355 1.9e-12 77.0 37 86.5
Manes.15G126300 Manihot esculenta HOM05D000424 ORTHO05D000355 1.9e-12 77.0 106 75.5
Rhsim09G0067800 Rhododendron simsii HOM05D000424 ORTHO05D000355 1.9e-12 77.0 108 74.1
RhsimUnG0084600 Rhododendron simsii HOM05D000424 ORTHO05D000355 1.9e-12 77.0 108 74.1
Thhalv10000687m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 2.5e-12 76.6 39 79.5
Sp5g26230 Schrenkiella parvula HOM05D000424 ORTHO05D000355 2.5e-12 76.6 39 79.5
EL10Ac6g14253 Beta vulgaris HOM05D000424 ORTHO05D000355 3.3e-12 76.3 104 51.0
DCAR_026767 Daucus carota HOM05D000424 ORTHO05D000355 4.3e-12 75.9 115 67.8
AT1G71060 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 5.7e-12 75.5 38 81.6
Hund20691 Selenicereus undatus HOM05D000424 ORTHO05D000355 9.6e-12 74.7 108 66.7
ECA234G2733 Erigeron canadensis HOM05D000424 ORTHO05D000355 1.3e-11 74.3 108 63.0
Thhalv10018364m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.3e-11 74.3 38 78.9
HanXRQChr17g0567001 Helianthus annuus HOM05D000424 ORTHO05D000355 1.6e-11 73.9 106 67.9
Solyc05g008330.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 1.6e-11 73.9 37 86.5
Sopen05g004160 Solanum pennellii HOM05D000424 ORTHO05D000355 1.6e-11 73.9 37 86.5
PGSC0003DMG400030554 Solanum tuberosum HOM05D000424 ORTHO05D000355 1.6e-11 73.9 37 86.5
CAN.G3948.1 Capsicum annuum HOM05D000424 ORTHO05D000355 2.1e-11 73.6 40 77.5
Gohir.D02G145400 Gossypium hirsutum HOM05D000424 ORTHO05D000355 2.1e-11 73.6 37 83.8
Lalb_Chr02g0145411 Lupinus albus HOM05D000424 ORTHO05D000355 2.1e-11 73.6 38 78.9
Lalb_Chr02g0145461 Lupinus albus HOM05D000424 ORTHO05D000355 2.1e-11 73.6 38 78.9
HanXRQChr17g0567011 Helianthus annuus HOM05D000424 ORTHO05D000355 2.8e-11 73.2 108 67.6
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 3.7e-11 72.8 45 64.4
FvH4_4g32230 Fragaria vesca HOM05D000424 ORTHO05D000355 3.7e-11 72.8 38 84.2
FAN12G3308 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.7e-11 72.8 38 84.2
FAN17G1258 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.7e-11 72.8 38 84.2
FAN22G0088 Fragaria x ananassa HOM05D000330 ORTHO05D000209 3.7e-11 72.8 38 84.2
Glyma.10G264500 Glycine max HOM05D000424 ORTHO05D000355 3.7e-11 72.8 38 81.6
Actinidia31979 Actinidia chinensis HOM05D000520 ORTHO05D006660 4.8e-11 72.4 37 81.1
HanXRQChr17g0566991 Helianthus annuus HOM05D000424 ORTHO05D000355 4.8e-11 72.4 41 70.7
TPR.G30149 Trifolium pratense HOM05D000424 ORTHO05D000355 4.8e-11 72.4 41 73.2
CAN.G185.20 Capsicum annuum HOM05D000424 ORTHO05D000355 8.2e-11 71.6 39 82.1
CsaV3_5G028520 Cucumis sativus L. HOM05D000424 ORTHO05D000355 8.2e-11 71.6 36 80.6
arahy.Tifrunner.gnm1.ann1.P9G8D9 Arachis hypogaea HOM05D000424 ORTHO05D000355 1.1e-10 71.2 38 76.3
arahy.Tifrunner.gnm1.ann1.TA9010 Arachis hypogaea HOM05D000424 ORTHO05D000355 1.1e-10 71.2 38 76.3
SGA_v2.0_scaffold39G15152 Striga asiatica HOM05D000424 ORTHO05D000355 2.4e-10 70.1 42 71.4
FAN07G0255 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.5e-09 67.4 37 81.1
TAR206G0002 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.5e-09 67.4 33 90.9
TAR206G0004 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.5e-09 67.4 33 90.9
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 2.6e-09 66.6 46 60.9
Gorai.005G162800 Gossypium raimondii HOM05D000424 ORTHO05D000355 3.4e-09 66.2 34 82.4
AUR62039554 Chenopodium quinoa HOM05D000424 ORTHO05D000355 4.5e-09 65.9 43 58.1
Lj2g0000352 Lotus japonicus HOM05D000424 ORTHO05D000355 4.5e-09 65.9 38 63.2
Psat2g188440 Pisum sativum HOM05D000424 ORTHO05D000355 4.5e-09 65.9 44 65.9
Thecc.02G279200 Theobroma cacao HOM05D000424 ORTHO05D000355 7.6e-09 65.1 35 80.0
AUR62014131 Chenopodium quinoa HOM05D000424 ORTHO05D000355 1.0e-08 64.7 43 55.8
PSO135G0044 Papaver somniferum HOM05D000424 ORTHO05D000355 2.2e-08 63.5 46 56.5
VMungo0720G0382 Vigna mungo HOM05D000424 ORTHO05D000355 2.2e-08 63.5 33 81.8
Nn4g24095 Nelumbo nucifera HOM05D000424 ORTHO05D000355 6.5e-08 62.0 106 71.7
Phvul.007G037500 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.4e-07 60.8 33 78.8
Ciclev10014876m.g Citrus clementina HOM05D000424 ORTHO05D000355 2.5e-07 60.1 33 78.8
CDE09G0424 Ceratophyllum demersum HOM05D000069 ORTHO05D000355 3.2e-07 59.7 42 54.8
MBI16_g32951_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 2.7e-06 56.6 38 60.5
Sed0023429 Sechium edule HOM05D000424 ORTHO05D000355 2.7e-06 56.6 44 50.0
THA.LOC104822166 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 3.6e-06 56.2 30 76.7
Os03g0761300 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 4.6e-06 55.8 42 52.4
Eucgr.G02199 Eucalyptus grandis HOM05D000424 ORTHO05D000355 6.1e-06 55.5 30 76.7
MELO3C010658.2 Cucumis melo HOM05D000424 ORTHO05D000355 7.9e-06 55.1 44 45.5


User provided reference genes

Program Settings