Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011503001 Vitis vinifera HOM05D005710 ORTHO05D004657 2.1e-61 239.2 157 100.0
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 2.0e-14 83.2 76 55.3
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 4.4e-14 82.0 68 58.8
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 5.7e-14 81.6 65 61.5
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 9.8e-14 80.9 77 54.5
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 6.3e-13 78.2 65 58.5
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.1e-12 77.4 77 50.6
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.4e-12 77.0 64 57.8
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 1.4e-12 77.0 71 59.2
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 1.8e-12 76.6 89 50.6
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 1.8e-12 76.6 65 60.0
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 2.4e-12 76.3 65 58.5
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 5.4e-12 75.1 64 56.2
Oeu000861.1 Olea europaea HOM05D005710 ORTHO05D004657 5.4e-12 75.1 78 51.3
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 7.0e-12 74.7 73 58.9
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 9.2e-12 74.3 54 63.0
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 9.2e-12 74.3 63 55.6
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 1.2e-11 73.9 74 50.0
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 1.2e-11 73.9 67 58.2
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 1.2e-11 73.9 54 63.0
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 1.6e-11 73.6 74 52.7
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.6e-11 73.6 65 56.9
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.6e-11 73.6 65 56.9
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 2.0e-11 73.2 78 48.7
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 2.7e-11 72.8 74 48.6
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 2.7e-11 72.8 65 60.0
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 3.5e-11 72.4 64 53.1
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 3.5e-11 72.4 65 55.4
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 3.5e-11 72.4 69 52.2
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 5.9e-11 71.6 69 52.2
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 7.8e-11 71.2 63 52.4
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 7.8e-11 71.2 62 56.5
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 1.7e-10 70.1 79 45.6
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 1.7e-10 70.1 81 50.6
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.7e-10 70.1 69 50.7
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 2.9e-10 69.3 65 53.8
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 2.9e-10 69.3 57 56.1
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 3.8e-10 68.9 76 50.0
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 3.8e-10 68.9 67 52.2
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 6.6e-10 68.2 62 51.6
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 6.6e-10 68.2 66 47.0
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 8.6e-10 67.8 53 58.5
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 8.6e-10 67.8 69 49.3
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 8.6e-10 67.8 69 49.3
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 2.5e-09 66.2 77 45.5
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.5e-09 66.2 81 45.7
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 3.3e-09 65.9 65 50.8
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 4.3e-09 65.5 64 51.6
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 4.3e-09 65.5 84 45.2
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 1.6e-08 63.5 63 52.4
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 3.6e-08 62.4 63 47.6
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 4.7e-08 62.0 63 50.8
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 4.7e-08 62.0 58 53.4
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 6.1e-08 61.6 85 42.4
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 1.0e-07 60.8 51 56.9
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.0e-07 60.8 80 38.8
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 1.8e-07 60.1 60 43.3
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 1.8e-07 60.1 81 46.9
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 1.8e-07 60.1 66 47.0
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 2.3e-07 59.7 69 44.9
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 3.0e-07 59.3 63 47.6
Potri.004G124301 Populus trichocarpa HOM05D005710 ORTHO05D004657 4.0e-07 58.9 55 49.1
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 4.0e-07 58.9 64 45.3
Oeu033388.1 Olea europaea HOM05D005710 ORTHO05D004657 5.2e-07 58.5 53 54.7
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 5.2e-07 58.5 73 47.9
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 6.8e-07 58.2 63 47.6
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 6.8e-07 58.2 61 45.9
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 8.9e-07 57.8 45 64.4
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 8.9e-07 57.8 63 47.6
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 8.9e-07 57.8 76 44.7
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 1.2e-06 57.4 48 54.2
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 1.2e-06 57.4 65 49.2
Migut.K01288 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.5e-06 57.0 42 66.7
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 1.5e-06 57.0 60 50.0
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 1.5e-06 57.0 84 40.5
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 2.0e-06 56.6 64 46.9
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 2.6e-06 56.2 84 42.9
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 3.4e-06 55.8 76 43.4
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 3.4e-06 55.8 44 59.1
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 4.4e-06 55.5 48 58.3
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 5.8e-06 55.1 72 45.8
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 7.5e-06 54.7 64 45.3
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 9.8e-06 54.3 45 51.1
Nn4g23370 Nelumbo nucifera HOM05D005710 ORTHO05D004657 9.8e-06 54.3 52 48.1


User provided reference genes

Program Settings