Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 8.5e-252 873.2 453 100.0
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 1.7e-231 805.8 454 89.0
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 8.2e-231 803.5 453 88.1
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 3.5e-229 798.1 452 87.4
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.0e-228 796.6 456 90.6
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.3e-228 796.2 456 90.4
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 8.5e-228 793.5 454 87.7
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.1e-227 793.1 460 90.4
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.1e-227 793.1 455 90.8
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 3.2e-227 791.6 453 86.5
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.8e-225 785.8 456 89.5
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 3.0e-225 785.0 454 85.7
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 5.2e-225 784.3 453 86.3
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 7.5e-224 780.4 454 84.8
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 6.3e-223 777.3 455 87.9
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.4e-222 776.2 454 84.4
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 7.0e-222 773.9 456 86.0
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 7.0e-222 773.9 461 86.6
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 9.1e-222 773.5 456 84.4
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 3.5e-221 771.5 453 83.7
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 4.5e-221 771.2 453 86.8
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 1.0e-220 770.0 453 84.1
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 1.0e-220 770.0 458 83.2
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 1.3e-220 769.6 461 84.8
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 8.6e-220 766.9 453 83.4
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.5e-219 766.1 473 84.6
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.5e-219 766.1 474 83.1
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 2.5e-219 765.4 519 79.0
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 7.2e-219 763.8 454 85.2
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 2.1e-218 762.3 456 82.9
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 4.7e-218 761.1 453 83.7
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 6.1e-218 760.8 454 83.0
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 8.0e-218 760.4 453 83.0
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 8.0e-218 760.4 471 83.0
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 8.0e-218 760.4 453 83.4
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 1.0e-217 760.0 453 82.8
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 1.4e-217 759.6 471 84.3
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 2.3e-217 758.8 452 84.1
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 8.8e-217 756.9 451 83.4
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 4.4e-216 754.6 456 82.5
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 1.3e-215 753.1 453 81.9
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 3.7e-215 751.5 454 84.1
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 4.9e-215 751.1 453 81.9
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 6.3e-215 750.7 450 83.3
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 2.4e-214 748.8 456 82.5
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 2.4e-214 748.8 454 84.1
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 9.2e-214 746.9 454 84.1
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 1.0e-212 743.4 454 83.5
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 2.9e-212 741.9 460 84.3
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 3.8e-212 741.5 460 84.6
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 2.5e-211 738.8 459 81.5
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 3.3e-211 738.4 453 81.5
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 9.5e-211 736.9 459 81.7
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 1.6e-210 736.1 459 81.0
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 3.6e-210 734.9 458 81.4
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.8e-209 732.6 446 82.3
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 2.3e-209 732.3 455 80.4
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 1.5e-208 729.6 456 82.0
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 9.8e-208 726.9 455 80.0
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 2.2e-207 725.7 458 80.8
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 6.4e-207 724.2 424 85.1
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 1.4e-206 723.0 424 84.9
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 1.8e-206 722.6 455 80.0
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 1.8e-206 722.6 459 79.3
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 1.8e-206 722.6 451 80.7
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 1.2e-205 719.9 455 80.2
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 2.0e-205 719.2 446 83.2
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 1.0e-204 716.8 454 80.6
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 1.3e-204 716.5 451 80.0
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 2.5e-203 712.2 452 80.1
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 4.3e-203 711.4 453 79.9
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 7.3e-203 710.7 452 79.6
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 7.3e-203 710.7 455 79.1
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 6.2e-202 707.6 454 79.5
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 2.3e-201 705.7 454 79.3
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 2.0e-200 702.6 457 79.4
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 8.3e-199 697.2 453 83.4
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 4.1e-198 694.9 449 77.5
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 4.1e-198 694.9 382 89.0
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 7.0e-198 694.1 454 77.8
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 2.7e-197 692.2 467 80.3
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 6.0e-197 691.0 362 93.1
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 7.8e-197 690.6 456 79.2
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 5.0e-196 688.0 463 77.1
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 1.8e-193 679.5 385 85.5
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 3.7e-191 671.8 460 76.5
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.1e-190 668.3 357 91.3
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 3.6e-186 655.2 370 86.2
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 4.7e-186 654.8 452 75.0
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 5.1e-180 634.8 332 93.4
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 1.5e-176 623.2 380 79.2
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.0e-172 610.5 332 89.2
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.5e-163 579.3 417 77.7
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 2.1e-162 576.2 383 73.1
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 1.1e-161 573.9 355 83.4
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 3.1e-161 572.4 383 72.1
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 9.0e-161 570.9 456 68.6
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.5e-160 570.1 376 78.5
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 1.5e-160 570.1 381 71.4
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 2.9e-151 539.3 283 92.6
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 6.5e-151 538.1 380 67.6
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 1.5e-147 526.9 314 87.9
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 5.7e-147 525.0 279 91.8
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 1.1e-139 500.7 310 79.4
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 6.5e-135 485.0 404 61.6
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.4e-134 483.8 415 63.9
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 9.4e-134 481.1 318 75.5
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.3e-130 470.7 332 74.4
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 7.0e-129 464.9 235 94.9
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 7.0e-129 464.9 235 94.9
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 5.0e-127 458.8 413 60.8
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 1.9e-110 403.7 409 49.4
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 3.5e-96 356.3 242 78.1
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.2e-77 294.7 318 47.2
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 1.6e-61 241.1 337 42.1
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.6e-56 224.6 403 36.0
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 7.6e-51 205.7 380 35.0
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 6.4e-50 202.6 148 68.9
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 8.4e-50 202.2 117 83.8
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.9e-49 201.1 341 35.5
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 1.0e-47 195.3 102 91.2
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 2.3e-47 194.1 349 34.4
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 5.1e-47 193.0 149 74.5
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 1.4e-44 184.9 363 32.2
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 4.5e-43 179.9 100 88.0
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 1.9e-38 164.5 96 87.5
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 6.3e-21 106.3 51 90.2
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 5.3e-20 103.2 89 59.6
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 1.1e-14 85.5 45 97.8
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 7.2e-09 66.2 38 86.8
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 1.6e-08 65.1 42 78.6
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 2.1e-08 64.7 160 26.9


User provided reference genes

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