Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 0.0e+00 1096.6 564 100.0
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 2.4e-94 350.5 544 42.3
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.5e-88 331.3 554 41.3
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 6.1e-82 309.3 539 41.2
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.5e-80 304.7 551 40.7
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.1e-78 298.5 542 39.9
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 4.1e-78 296.6 542 39.7
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.8e-73 281.2 487 41.9
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 8.8e-73 278.9 489 40.3
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.7e-71 274.6 505 39.0
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 6.3e-71 272.7 486 37.9
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.3e-71 272.7 546 37.7
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.2e-69 268.5 543 37.8
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.6e-69 268.1 491 40.1
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 6.5e-68 262.7 576 37.3
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 8.5e-68 262.3 465 41.1
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 8.5e-68 262.3 527 36.8
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.9e-67 261.2 585 36.2
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 5.5e-67 259.6 528 39.0
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 4.7e-66 256.5 504 37.3
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 8.8e-65 252.3 494 38.1
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 3.4e-64 250.4 562 34.9
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 6.3e-63 246.1 525 37.1
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.1e-62 245.4 490 38.2
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 3.1e-62 243.8 579 33.7
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 4.1e-62 243.4 496 38.1
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 5.3e-62 243.0 539 36.9
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.0e-62 242.7 494 35.6
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 9.1e-62 242.3 451 38.6
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 9.1e-62 242.3 467 38.8
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 2.0e-61 241.1 487 37.4
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.0e-61 241.1 535 35.5
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.7e-61 239.2 467 38.5
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.8e-60 236.9 494 35.2
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 8.5e-60 235.7 496 35.1
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 8.5e-60 235.7 544 35.7
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 8.5e-60 235.7 498 36.5
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.5e-59 235.0 525 35.2
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 7.2e-59 232.6 550 34.5
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 9.4e-59 232.3 529 35.7
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 4.7e-58 229.9 557 33.6
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.0e-57 228.8 527 34.9
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.8e-57 228.0 540 34.8
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.3e-57 227.6 461 37.1
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 5.2e-57 226.5 563 33.0
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 6.8e-57 226.1 543 35.2
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.2e-56 225.3 484 35.7
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.5e-56 224.9 517 35.4
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 2.0e-56 224.6 389 37.5
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 2.6e-56 224.2 515 34.8
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 5.7e-56 223.0 496 36.3
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 7.5e-56 222.6 456 34.2
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 9.8e-56 222.2 394 37.8
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 9.8e-56 222.2 511 37.0
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 3.7e-55 220.3 447 37.4
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 4.8e-55 219.9 513 34.9
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.1e-54 218.8 457 36.5
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.1e-54 218.8 549 35.2
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.4e-54 218.4 465 35.5
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.4e-54 217.6 306 46.4
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 5.4e-54 216.5 590 32.9
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 5.4e-54 216.5 550 32.0
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 5.4e-54 216.5 575 32.5
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 7.0e-54 216.1 485 34.8
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 9.1e-54 215.7 392 38.5
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 9.1e-54 215.7 466 34.8
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 9.1e-54 215.7 485 34.6
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.6e-53 214.9 504 33.9
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 2.0e-53 214.5 489 35.2
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 2.0e-53 214.5 466 34.1
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 2.7e-53 214.2 553 31.8
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 4.5e-53 213.4 387 37.7
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.9e-53 213.0 305 45.6
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 7.7e-53 212.6 534 33.7
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.3e-52 211.1 381 38.3
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.9e-52 210.7 405 35.3
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 5.0e-52 209.9 501 34.3
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 6.6e-52 209.5 383 36.3
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 6.6e-52 209.5 392 38.0
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.5e-51 208.4 482 34.0
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 4.2e-51 206.8 554 31.9
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 5.5e-51 206.5 457 35.0
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-51 206.5 383 35.8
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 5.5e-51 206.5 592 33.6
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 7.2e-51 206.1 457 35.0
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.2e-50 205.3 382 38.2
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.2e-50 205.3 447 37.1
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.6e-50 204.9 506 33.4
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.6e-50 204.9 506 33.4
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 2.8e-50 204.1 457 33.9
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 3.6e-50 203.8 436 34.6
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 1.4e-49 201.8 467 34.5
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.2e-49 199.9 517 32.1
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 8.9e-49 199.1 377 35.8
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 8.9e-49 199.1 457 33.5
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.2e-48 198.7 514 31.3
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.2e-48 198.7 464 33.8
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.0e-48 198.0 493 33.1
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 2.6e-48 197.6 377 35.8
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 3.4e-48 197.2 512 32.4
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 4.4e-48 196.8 514 31.1
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 5.7e-48 196.4 523 30.4
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 5.7e-48 196.4 523 30.4
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 5.7e-48 196.4 514 31.1
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 7.5e-48 196.1 489 32.3
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.7e-47 194.9 552 30.1
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 2.4e-46 191.0 446 32.7
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 3.2e-46 190.7 451 33.0
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.0e-46 189.5 573 30.4
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.2e-45 188.7 572 30.6
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.0e-44 185.7 639 31.0
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.9e-44 183.7 208 50.0
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 5.0e-44 183.3 507 31.2
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.0e-44 183.3 374 37.2
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.1e-43 182.2 371 37.7
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.9e-43 181.4 537 30.9
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 9.5e-43 179.1 496 29.6
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 1.0e-41 175.6 538 29.9
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 1.7e-39 168.3 389 32.6
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.1e-38 165.6 229 45.0
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.6e-37 161.8 192 49.0
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 4.6e-37 160.2 344 33.7
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.0e-36 159.1 489 29.7
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.6e-36 156.4 272 38.6
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.6e-36 156.4 573 28.8
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 8.6e-36 156.0 406 32.3
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 9.5e-35 152.5 192 45.8
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.6e-34 150.6 300 37.0
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.0e-32 144.8 404 33.9
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.9e-31 141.0 406 31.0
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 5.4e-30 136.7 192 44.8
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 1.1e-27 129.0 259 39.8
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.5e-27 127.9 501 28.9
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.5e-27 127.9 501 28.9
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.4e-24 117.5 149 47.7
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.2e-23 114.8 337 30.9
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.4e-22 112.1 106 54.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.0e-20 105.9 115 53.0
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 8.9e-17 92.8 205 34.6
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.4e-16 90.9 246 32.9
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 4.4e-16 90.5 561 24.2
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.2e-14 84.3 75 60.0
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 4.2e-14 84.0 241 33.2
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.2e-13 82.4 101 48.5
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 7.8e-13 79.7 95 50.5
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.3e-12 79.0 137 38.0
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 2.3e-12 78.2 196 32.7
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 5.1e-12 77.0 195 32.8


User provided reference genes

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