Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 1.1e-87 326.6 166 100.0
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 3.5e-70 268.5 161 80.7
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 5.1e-69 264.6 163 81.6
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 6.6e-69 264.2 163 80.4
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 5.6e-68 261.2 163 77.3
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 2.8e-67 258.8 163 77.9
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 2.8e-67 258.8 163 77.9
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 6.2e-67 257.7 160 80.0
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.1e-66 256.9 160 78.1
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 3.1e-66 255.4 166 75.3
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 3.1e-66 255.4 160 78.8
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 3.1e-66 255.4 163 76.1
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 4.0e-66 255.0 160 77.5
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 1.5e-65 253.1 160 76.2
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 4.4e-65 251.5 162 75.9
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 9.9e-65 250.4 160 75.0
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 9.9e-65 250.4 160 76.9
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 1.7e-64 249.6 160 75.0
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 2.9e-64 248.8 160 76.2
arahy.Tifrunner.gnm1.ann1.8Z97YG Arachis hypogaea HOM05D005192 ORTHO05D006023 3.7e-64 248.4 165 72.1
Gohir.D11G235900 Gossypium hirsutum HOM05D005192 ORTHO05D006023 3.7e-64 248.4 163 75.5
CiPaw.02G036100 Carya illinoinensis HOM05D005192 ORTHO05D006023 6.4e-64 247.7 161 77.0
arahy.Tifrunner.gnm1.ann1.SX2T07 Arachis hypogaea HOM05D005192 ORTHO05D006023 1.1e-63 246.9 165 71.5
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 1.1e-63 246.9 160 74.4
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 1.1e-63 246.9 163 73.6
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 1.9e-63 246.1 163 74.8
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 1.9e-63 246.1 159 73.0
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 2.4e-63 245.7 160 73.8
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 4.1e-63 245.0 161 72.0
vmacro13581 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 5.4e-63 244.6 162 74.7
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 9.2e-63 243.8 162 74.1
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 2.7e-62 242.3 158 74.1
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 3.5e-62 241.9 163 71.8
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 3.5e-62 241.9 161 72.0
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 4.6e-62 241.5 159 72.3
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 4.6e-62 241.5 163 69.9
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 6.0e-62 241.1 162 72.2
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 1.0e-61 240.4 160 68.1
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.0e-61 240.4 163 72.4
FAN01G2901 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.3e-61 240.0 163 72.4
FAN10G1987 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.7e-61 239.6 160 73.8
FvH4_7g07320 Fragaria vesca HOM05D005192 ORTHO05D006023 2.3e-61 239.2 163 72.4
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 2.3e-61 239.2 163 69.9
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 3.9e-61 238.4 161 67.7
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 6.6e-61 237.7 161 65.8
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 1.9e-60 236.1 161 67.7
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 2.5e-60 235.7 160 70.6
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 5.6e-60 234.6 167 68.9
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 5.6e-60 234.6 161 68.3
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 7.3e-60 234.2 160 71.2
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 9.6e-60 233.8 161 72.0
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 1.6e-59 233.0 155 71.0
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 1.6e-59 233.0 151 74.8
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 2.1e-59 232.6 161 68.9
Dinv43532 Davidia involucrata HOM05D005192 ORTHO05D006023 2.8e-59 232.3 160 70.0
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 2.8e-59 232.3 163 68.7
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 3.6e-59 231.9 155 71.6
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 4.7e-59 231.5 165 69.1
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 4.7e-59 231.5 159 69.8
C02p26310 Brassica napus HOM05D005192 ORTHO05D006023 6.2e-59 231.1 155 71.0
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 8.1e-59 230.7 164 70.1
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 8.1e-59 230.7 161 70.2
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 1.1e-58 230.3 161 65.2
BcaC03g15075 Brassica carinata HOM05D005192 ORTHO05D006023 1.4e-58 229.9 155 70.3
BcaC03g15076 Brassica carinata HOM05D005192 ORTHO05D006023 1.4e-58 229.9 155 70.3
A02p15850 Brassica napus HOM05D005192 ORTHO05D006023 1.4e-58 229.9 155 70.3
BolC2t08702H Brassica oleracea HOM05D005192 ORTHO05D006023 1.4e-58 229.9 155 70.3
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.4e-58 229.9 152 72.4
Sp5g18870 Schrenkiella parvula HOM05D005192 ORTHO05D006023 1.4e-58 229.9 155 71.6
Lj9C612T3 Lonicera japonica HOM05D005192 ORTHO05D006023 1.8e-58 229.6 160 69.4
CiPaw.01G069000 Carya illinoinensis HOM05D005192 ORTHO05D006023 2.4e-58 229.2 159 70.4
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 3.1e-58 228.8 155 70.3
Sabra13G0062500 Salix brachista HOM05D005192 ORTHO05D006023 4.0e-58 228.4 158 72.2
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 5.2e-58 228.0 161 67.1
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 1.2e-57 226.9 163 68.1
AT1G64850 Arabidopsis thaliana HOM05D005192 ORTHO05D006023 1.2e-57 226.9 155 68.4
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 1.2e-57 226.9 163 68.7
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 1.5e-57 226.5 155 69.0
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 3.4e-57 225.3 161 67.1
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 9.9e-57 223.8 161 68.3
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 4.9e-56 221.5 150 71.3
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 6.4e-56 221.1 161 68.3
FAN06G2558 Fragaria x ananassa HOM05D005192 ORTHO05D006023 6.4e-56 221.1 153 71.2
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 8.4e-56 220.7 150 67.3
Solyc10g061870.1 Solanum lycopersicum HOM05D005192 ORTHO05D006023 8.4e-56 220.7 151 70.9
DCAR_029189 Daucus carota HOM05D005192 ORTHO05D006023 1.4e-55 219.9 160 62.5
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 1.4e-55 219.9 152 70.4
Lalb_Chr12g0210171 Lupinus albus HOM05D005192 ORTHO05D006023 1.9e-55 219.5 154 70.1
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 1.9e-55 219.5 150 72.7
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 5.4e-55 218.0 143 74.8
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 1.2e-54 216.9 193 57.5
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 3.5e-54 215.3 144 72.2
ATR0829G090 Amborella trichopoda HOM05D005192 ORTHO05D006023 4.6e-54 214.9 165 65.5
Nn3g21169 Nelumbo nucifera HOM05D005192 ORTHO05D006023 6.0e-54 214.5 162 63.0
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 1.7e-53 213.0 152 67.1
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 2.3e-53 212.6 149 71.8
unitig_61.g26432 Utricularia gibba HOM05D005192 ORTHO05D006023 3.0e-53 212.2 161 60.9
PSO782G4714 Papaver somniferum HOM05D005192 ORTHO05D006023 5.1e-53 211.5 164 60.4
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.5e-52 209.1 151 65.6
PSO063G5995 Papaver somniferum HOM05D005192 ORTHO05D006023 3.6e-51 205.3 160 57.5
HPP92_014406 Vanilla planifolia HOM05D005192 ORTHO05D006023 3.6e-51 205.3 165 60.0
TAR629G2600 Trochodendron aralioides HOM05D005192 ORTHO05D006023 2.4e-50 202.6 170 60.6
unitig_0.g1357 Utricularia gibba HOM05D005192 ORTHO05D006023 3.1e-50 202.2 142 65.5
ClCG05G002570 Citrullus lanatus HOM05D005192 ORTHO05D006023 3.4e-49 198.7 160 61.9
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 4.4e-49 198.4 160 62.5
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 9.9e-49 197.2 163 58.9
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 1.3e-48 196.8 159 59.7
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 3.8e-48 195.3 167 57.5
Sed0020247 Sechium edule HOM05D005192 ORTHO05D006023 3.8e-48 195.3 162 60.5
MD02G1236300 Malus domestica HOM05D005192 ORTHO05D006023 2.4e-47 192.6 154 61.0
arahy.Tifrunner.gnm1.ann1.9NJ9Q0 Arachis hypogaea HOM05D005192 ORTHO05D006023 1.6e-46 189.9 159 61.6
Phvul.010G038700 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 3.5e-46 188.7 163 55.2
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 3.0e-45 185.7 161 58.4
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 3.3e-44 182.2 122 72.1
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 5.6e-44 181.4 124 73.4
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 1.3e-43 180.3 160 55.6
CDE04G3605 Ceratophyllum demersum HOM05D005192 ORTHO05D006023 3.6e-43 178.7 164 50.6
Peaxi162Scf00250g00049 Petunia axillaris HOM05D005192 ORTHO05D006023 5.8e-41 171.4 131 64.9
MELO3C006223.2 Cucumis melo HOM05D005192 ORTHO05D006023 2.1e-38 162.9 192 45.3
Lj7A558T36 Lonicera japonica HOM05D005192 ORTHO05D006023 3.0e-37 159.1 111 68.5
ClCG05G002560 Citrullus lanatus HOM05D005192 ORTHO05D006023 6.2e-35 151.4 165 51.5
MELO3C006222.2 Cucumis melo HOM05D005192 ORTHO05D006023 6.2e-35 151.4 169 47.9
Mapoly0125s0044 Marchantia polymorpha HOM05D005192 ORTHO05D006023 1.1e-34 150.6 152 48.0
CsaV3_3G010000 Cucumis sativus L. HOM05D005192 ORTHO05D006023 1.7e-32 143.3 165 47.9
SMO137G0328 Selaginella moellendorffii HOM05D005192 ORTHO05D006023 1.4e-31 140.2 146 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2458 Anthoceros agrestis HOM05D005192 ORTHO05D006023 4.6e-30 135.2 157 44.6
QL04p052584 Quercus lobata HOM05D005192 ORTHO05D006023 1.1e-28 130.6 91 71.4
Lj9A615G51 Lonicera japonica HOM05D005192 ORTHO05D006023 1.5e-28 130.2 89 70.8
PGSC0003DMG400013231 Solanum tuberosum HOM05D005192 ORTHO05D006023 9.6e-28 127.5 85 75.3
QL04p052587 Quercus lobata HOM05D005192 ORTHO05D006023 1.1e-26 124.0 75 73.3
Thhalv10011151m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 6.9e-26 121.3 79 75.9
ATR0829G133 Amborella trichopoda HOM05D005192 ORTHO05D006023 5.0e-24 115.2 159 39.6
Pp3c12_14230 Physcomitrium patens HOM05D005192 ORTHO05D006023 5.0e-24 115.2 151 41.1
Pp3c3_35520 Physcomitrium patens HOM05D005192 ORTHO05D006023 5.0e-24 115.2 152 39.5
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 5.5e-23 111.7 156 35.3
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 5.5e-23 111.7 156 35.3
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 5.5e-23 111.7 156 35.3
Thhalv10010860m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 3.9e-21 105.5 79 62.0
MBI04_g12223_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 1.4e-15 87.0 142 38.7
MD07G1078400 Malus domestica HOM05D005192 ORTHO05D006023 3.2e-15 85.9 51 72.5
HPP92_003408 Vanilla planifolia HOM05D005192 ORTHO05D006023 2.1e-14 83.2 148 31.1
SEGI_19507 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.6e-14 82.4 157 28.7
SEGI_41139 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.6e-14 82.4 157 28.7
SEGI_29788 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 4.6e-14 82.0 172 29.7
SEGI_33126 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.0e-13 80.9 157 28.7
Os04g0601500 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 2.2e-11 73.2 139 30.9
CBR_g41233 Chara braunii HOM05D000019 ORTHO05D000048 6.9e-10 68.2 113 39.8
Zm00001eb430320 Zea mays HOM05D005192 ORTHO05D006023 1.5e-09 67.0 158 28.5
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 6.5e-08 61.6 122 30.3
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 1.1e-07 60.8 144 29.9
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 2.5e-07 59.7 142 30.3
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 4.2e-07 58.9 122 27.9
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 5.5e-07 58.5 122 28.7
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 7.2e-07 58.2 123 27.6
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 7.2e-07 58.2 130 30.0
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 9.4e-07 57.8 158 26.6
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 9.4e-07 57.8 162 27.8
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 9.4e-07 57.8 123 28.5
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 9.4e-07 57.8 128 28.9
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 9.4e-07 57.8 114 30.7
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 1.2e-06 57.4 122 27.9
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 1.2e-06 57.4 136 24.3
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 1.6e-06 57.0 136 24.3
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 1.6e-06 57.0 129 29.5
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 1.6e-06 57.0 162 26.5
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 2.1e-06 56.6 122 27.9
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 2.1e-06 56.6 145 31.7
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 2.7e-06 56.2 122 27.9
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 2.7e-06 56.2 134 28.4
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 2.7e-06 56.2 130 30.8
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 3.6e-06 55.8 130 28.5
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 3.6e-06 55.8 121 33.1
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 4.7e-06 55.5 117 30.8
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 4.7e-06 55.5 122 27.0
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 4.7e-06 55.5 120 25.8
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 6.1e-06 55.1 125 29.6


User provided reference genes

Program Settings