Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 6.4e-157 557.4 281 100.0
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.7e-139 498.8 260 94.6
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.5e-139 498.4 260 96.5
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 3.5e-139 498.4 260 96.5
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 3.5e-139 498.4 259 96.1
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.3e-138 496.5 260 95.4
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 3.0e-138 495.4 260 94.6
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 3.0e-138 495.4 260 94.6
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 5.1e-138 494.6 260 94.2
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.6e-138 494.2 260 95.0
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 6.6e-138 494.2 260 95.0
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 8.7e-138 493.8 260 94.2
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 8.7e-138 493.8 260 94.2
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.7e-138 493.8 260 94.2
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.5e-137 493.0 260 95.0
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.5e-137 493.0 260 94.2
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.5e-137 493.0 260 94.6
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.9e-137 492.7 260 94.2
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 1.9e-137 492.7 260 95.0
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.5e-137 492.3 260 93.8
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 2.5e-137 492.3 260 93.8
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 4.3e-137 491.5 260 94.2
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 5.6e-137 491.1 258 95.0
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 5.6e-137 491.1 260 93.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 7.3e-137 490.7 260 93.5
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 7.3e-137 490.7 260 95.0
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 9.6e-137 490.3 260 93.5
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 9.6e-137 490.3 260 94.2
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 9.6e-137 490.3 267 91.8
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.3e-136 490.0 260 94.6
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.3e-136 490.0 260 94.6
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 1.3e-136 490.0 260 93.1
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.3e-136 490.0 260 93.1
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.6e-136 489.6 260 94.6
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.6e-136 489.6 260 94.2
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.6e-136 489.6 260 93.8
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.6e-136 489.6 260 94.6
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 2.1e-136 489.2 260 93.1
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 2.1e-136 489.2 260 93.1
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 2.8e-136 488.8 260 93.5
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.8e-136 488.8 260 93.8
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 2.8e-136 488.8 264 92.4
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 6.2e-136 487.6 260 93.1
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 6.2e-136 487.6 260 93.1
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 6.2e-136 487.6 260 93.1
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.1e-135 486.9 260 93.8
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.1e-135 486.9 260 93.8
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.1e-135 486.9 260 92.7
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.4e-135 486.5 259 94.6
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.0e-135 485.0 260 93.5
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 4.0e-135 485.0 260 92.7
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 5.3e-135 484.6 260 92.3
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 5.3e-135 484.6 260 93.1
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 9.0e-135 483.8 260 93.1
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 9.0e-135 483.8 260 93.1
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.0e-134 482.6 260 92.3
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.0e-134 482.6 260 93.1
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.6e-134 482.3 260 92.3
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 1.7e-133 479.6 260 90.8
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.7e-133 479.6 260 92.3
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.7e-133 479.6 260 92.7
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 3.8e-133 478.4 260 90.8
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 3.8e-133 478.4 260 91.9
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 4.9e-133 478.0 269 89.2
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.4e-132 476.5 263 90.9
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.9e-132 476.1 260 91.5
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.9e-132 476.1 260 90.4
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 2.4e-132 475.7 260 90.8
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 2.4e-132 475.7 260 91.5
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.2e-132 475.3 260 91.2
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 3.2e-132 475.3 260 91.2
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 4.2e-132 474.9 260 91.2
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.1e-132 474.2 276 87.7
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 7.1e-132 474.2 260 91.2
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 9.3e-132 473.8 260 91.5
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 9.3e-132 473.8 260 91.2
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.2e-131 473.4 260 91.2
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.2e-131 473.4 260 90.8
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.2e-131 473.4 260 90.8
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.6e-131 473.0 260 90.4
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.6e-131 473.0 260 90.4
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.6e-131 473.0 260 90.4
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 2.1e-131 472.6 260 90.4
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.7e-131 472.2 260 90.4
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.5e-131 471.9 260 90.8
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 3.5e-131 471.9 255 91.4
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 7.9e-131 470.7 260 90.0
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 7.9e-131 470.7 260 90.0
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 7.9e-131 470.7 260 91.2
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.0e-130 470.3 260 88.5
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 3.9e-130 468.4 260 90.0
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 5.1e-130 468.0 260 89.6
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 6.7e-130 467.6 265 88.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 1.5e-129 466.5 284 84.5
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.9e-129 466.1 260 88.1
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.9e-129 466.1 260 90.0
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 4.3e-129 464.9 260 90.4
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 4.3e-129 464.9 262 88.5
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 4.3e-129 464.9 262 88.5
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 9.6e-129 463.8 260 89.2
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 9.6e-129 463.8 265 87.9
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 9.6e-129 463.8 260 90.0
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.3e-128 463.4 260 89.2
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.3e-128 463.4 260 87.7
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 2.1e-128 462.6 262 88.5
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 2.1e-128 462.6 265 87.5
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 2.1e-128 462.6 265 87.5
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.8e-128 462.2 260 87.3
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 2.8e-128 462.2 260 88.5
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 3.6e-128 461.8 262 88.2
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 4.8e-128 461.5 260 89.6
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 8.1e-128 460.7 260 88.5
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.1e-127 460.3 260 88.8
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 1.4e-127 459.9 260 86.2
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 5.3e-127 458.0 262 87.8
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 5.3e-127 458.0 260 86.5
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 5.3e-127 458.0 260 88.5
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 5.3e-127 458.0 260 86.5
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.5e-126 456.4 260 87.3
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.9e-125 452.2 240 93.8
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 4.9e-125 451.4 260 87.7
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 6.4e-125 451.1 260 84.2
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 6.4e-125 451.1 239 94.6
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 8.4e-125 450.7 240 93.3
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.9e-124 449.5 255 87.1
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 2.4e-124 449.1 260 86.2
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 2.4e-124 449.1 260 85.8
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 5.5e-124 448.0 260 83.8
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 2.7e-123 445.7 260 85.8
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 1.8e-122 443.0 260 85.8
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 3.9e-122 441.8 260 85.8
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 4.0e-119 431.8 275 81.1
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.2e-115 420.2 260 83.5
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 3.5e-115 418.7 260 81.5
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 3.5e-115 418.7 260 81.5
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 1.9e-113 412.9 260 79.2
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 2.5e-113 412.5 260 75.0
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 5.7e-113 411.4 260 78.5
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 3.7e-112 408.7 213 94.4
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.8e-112 408.3 336 66.4
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.3e-112 407.9 260 81.5
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.1e-111 405.2 260 81.2
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 4.5e-110 401.7 221 91.4
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.2e-109 399.4 265 77.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.8e-106 389.8 201 94.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 5.1e-106 388.3 308 69.8
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 4.3e-105 385.2 242 79.8
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.3e-104 383.6 253 77.5
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 7.9e-99 364.4 195 89.7
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.4e-98 363.6 200 91.0
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.2e-96 356.3 256 76.2
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-90 336.7 177 92.1
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 5.2e-90 335.1 259 64.5
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 6.1e-83 311.6 161 92.5
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 9.1e-71 271.2 229 60.3
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.8e-67 259.6 240 59.6
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.0e-58 231.1 144 82.6
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.8e-58 230.3 142 84.5
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.8e-58 230.3 134 88.1
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.8e-58 228.4 113 96.5
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.3e-48 197.6 98 94.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.3e-45 187.6 271 48.3
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.7e-45 187.2 111 84.7
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 4.4e-41 172.6 196 52.6
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 9.9e-41 171.4 108 79.6
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.0e-37 161.4 135 63.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 3.9e-37 159.5 92 84.8
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 8.6e-37 158.3 195 49.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 9.5e-36 154.8 100 83.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 4.1e-31 139.4 81 86.4
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.6e-30 137.5 92 76.1
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 5.2e-26 122.5 111 64.0
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 2.5e-20 103.6 69 78.3
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 7.1e-15 85.5 81 60.5
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 3.7e-11 73.2 60 66.7
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 3.1e-10 70.1 59 62.7
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 9.9e-09 65.1 44 77.3
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 9.9e-09 65.1 36 83.3
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.8e-08 63.2 52 67.3
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 3.8e-08 63.2 65 56.9
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 4.2e-07 59.7 38 73.7
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 9.3e-07 58.5 34 82.4
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 7.9e-06 55.5 34 79.4
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 7.9e-06 55.5 145 37.2


User provided reference genes

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