Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.6e-29 132.9 64 100.0
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 2.8e-18 95.5 56 69.6
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 3.6e-18 95.1 58 67.2
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 1.1e-17 93.6 61 65.6
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.1e-17 93.6 56 67.9
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.4e-17 93.2 56 67.9
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 1.4e-17 93.2 57 66.7
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.8e-17 92.8 58 56.9
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.8e-17 92.8 58 63.8
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.8e-17 92.8 62 58.1
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 3.1e-17 92.0 56 62.5
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 4.0e-17 91.7 50 72.0
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 5.3e-17 91.3 57 63.2
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 6.9e-17 90.9 58 60.3
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.2e-16 90.1 61 57.4
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 2.0e-16 89.4 52 69.2
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.6e-16 89.0 56 67.9
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 3.4e-16 88.6 56 66.1
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 5.8e-16 87.8 56 66.1
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 5.8e-16 87.8 57 56.1
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 5.8e-16 87.8 50 68.0
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 5.8e-16 87.8 49 69.4
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.6e-16 87.4 57 56.1
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 7.6e-16 87.4 56 64.3
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 7.6e-16 87.4 56 66.1
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.3e-15 86.7 48 66.7
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 1.7e-15 86.3 60 56.7
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 1.7e-15 86.3 60 56.7
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 1.7e-15 86.3 60 56.7
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 1.7e-15 86.3 60 56.7
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.7e-15 86.3 49 65.3
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.7e-15 86.3 57 61.4
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.9e-15 85.5 57 57.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.9e-15 85.5 57 57.9
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 3.8e-15 85.1 55 60.0
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 3.8e-15 85.1 56 60.7
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 3.8e-15 85.1 57 57.9
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 3.8e-15 85.1 56 60.7
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 3.8e-15 85.1 56 60.7
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 3.8e-15 85.1 56 60.7
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 3.8e-15 85.1 57 57.9
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.8e-15 85.1 57 54.4
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 4.9e-15 84.7 56 58.9
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 6.4e-15 84.3 57 59.6
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 6.4e-15 84.3 57 59.6
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 8.4e-15 84.0 49 71.4
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 8.4e-15 84.0 56 58.9
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 8.4e-15 84.0 56 60.7
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 8.4e-15 84.0 57 57.9
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.1e-14 83.6 56 60.7
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.4e-14 83.2 55 60.0
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.9e-14 82.8 55 58.2
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.4e-14 82.4 58 58.6
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 3.2e-14 82.0 52 61.5
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 3.2e-14 82.0 56 57.1
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 4.2e-14 81.6 54 59.3
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 4.2e-14 81.6 54 61.1
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 5.4e-14 81.3 54 59.3
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 5.4e-14 81.3 54 59.3
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 5.4e-14 81.3 53 62.3
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 5.4e-14 81.3 58 62.1
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 7.1e-14 80.9 57 54.4
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 7.1e-14 80.9 56 53.6
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 9.3e-14 80.5 54 55.6
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 9.3e-14 80.5 54 57.4
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 9.3e-14 80.5 58 62.1
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.2e-13 80.1 57 52.6
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.2e-13 80.1 58 53.4
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.2e-13 80.1 55 56.4
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.6e-13 79.7 58 50.0
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 1.6e-13 79.7 53 56.6
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 1.6e-13 79.7 55 56.4
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.1e-13 79.3 58 51.7
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 2.7e-13 79.0 52 63.5
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.7e-13 79.0 51 60.8
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 2.7e-13 79.0 51 62.7
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 3.5e-13 78.6 56 53.6
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 3.5e-13 78.6 53 58.5
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.5e-13 78.6 58 51.7
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 3.5e-13 78.6 50 58.0
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 3.5e-13 78.6 54 51.9
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.5e-13 78.6 55 54.5
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 4.6e-13 78.2 53 56.6
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.6e-13 78.2 57 52.6
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.6e-13 78.2 57 52.6
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.6e-13 78.2 52 57.7
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 4.6e-13 78.2 53 54.7
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 4.6e-13 78.2 52 57.7
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 4.6e-13 78.2 53 56.6
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 6.0e-13 77.8 50 60.0
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.0e-13 77.8 49 59.2
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 7.9e-13 77.4 54 51.9
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.9e-13 77.4 58 50.0
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 7.9e-13 77.4 49 59.2
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 7.9e-13 77.4 52 57.7
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.0e-12 77.0 57 54.4
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.0e-12 77.0 58 55.2
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.0e-12 77.0 60 53.3
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.3e-12 76.6 54 51.9
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.8e-12 76.3 55 56.4
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.8e-12 76.3 55 56.4
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.0e-12 75.5 57 54.4
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 3.0e-12 75.5 53 52.8
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.0e-12 75.5 50 58.0
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.0e-12 75.5 57 52.6
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.0e-12 75.5 57 52.6
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.0e-12 75.5 49 59.2
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.0e-12 75.5 57 52.6
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.0e-12 75.5 57 52.6
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 3.0e-12 75.5 49 55.1
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 5.1e-12 74.7 57 47.4
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 6.7e-12 74.3 58 48.3
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 6.7e-12 74.3 50 56.0
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.7e-12 74.3 48 58.3
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 6.7e-12 74.3 55 56.4
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 8.7e-12 73.9 55 50.9
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-11 73.6 49 59.2
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-11 73.6 50 56.0
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.5e-11 73.2 49 57.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.9e-11 72.8 55 52.7
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.9e-11 72.8 52 53.8
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.5e-11 72.4 53 50.9
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 2.5e-11 72.4 49 61.2
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.5e-11 72.4 51 56.9
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 2.5e-11 72.4 54 50.0
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 3.3e-11 72.0 55 56.4
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 3.3e-11 72.0 50 52.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 4.3e-11 71.6 52 55.8
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 7.4e-11 70.9 51 51.0
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 9.6e-11 70.5 53 50.9
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 9.6e-11 70.5 53 50.9
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 9.6e-11 70.5 59 49.2
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 9.6e-11 70.5 47 57.4
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.3e-10 70.1 57 43.9
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.3e-10 70.1 55 49.1
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.6e-10 69.7 55 50.9
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.1e-10 69.3 51 52.9
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 2.8e-10 68.9 57 42.1
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.6e-10 68.6 57 42.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.6e-10 68.6 57 42.1
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.6e-10 68.6 55 47.3
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 3.6e-10 68.6 55 47.3
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.8e-10 68.2 62 50.0
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 4.8e-10 68.2 51 49.0
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.1e-10 67.4 57 42.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.1e-10 67.4 57 42.1
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 3.1e-09 65.5 47 51.1
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.5e-08 63.2 46 58.7
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.0e-08 62.8 46 52.2
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 9.9e-08 60.5 55 40.0
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.3e-07 60.1 49 46.9
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 4.9e-07 58.2 55 38.2


User provided reference genes

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