Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 2146.7 1145 100.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1728.8 1153 80.0
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1720.3 1148 78.8
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1714.1 1154 78.5
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1708.3 1157 78.7
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1683.7 1124 77.1
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1679.5 1148 75.8
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1653.6 1148 77.3
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1653.3 1153 75.8
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1646.3 1138 76.1
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1642.9 1219 73.7
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1641.7 1148 76.6
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1639.8 1145 75.6
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1619.0 1012 81.9
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1610.5 1259 69.5
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1608.2 1121 76.6
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1606.7 1147 75.9
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1595.1 1126 73.4
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1593.2 1155 73.8
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1592.0 1120 74.7
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1591.6 1142 75.5
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1588.5 1129 74.0
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1583.2 1128 74.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1575.1 1160 72.3
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1572.0 1115 74.8
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1571.2 1135 72.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1554.7 1015 79.4
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1553.9 1127 73.4
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1546.6 1176 70.9
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1545.0 1150 73.7
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1539.2 1145 69.7
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1539.2 1147 70.9
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1532.3 1147 69.6
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1520.8 1121 73.1
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1520.0 1150 70.3
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1520.0 1152 69.8
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1518.8 1138 70.7
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1513.4 1120 72.9
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1511.1 1169 69.0
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1509.2 1185 67.7
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1505.3 1121 72.7
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1505.0 1147 68.6
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1502.3 1150 72.5
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1501.9 1121 72.7
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1501.1 1121 72.3
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1500.7 1148 68.8
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1497.3 1126 71.4
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1481.5 1141 71.3
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1476.8 1141 69.3
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1471.8 1132 69.6
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1471.4 1149 69.4
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1471.1 1147 68.0
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1464.5 1113 71.8
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1464.1 1119 67.0
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1459.5 1141 67.0
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1459.1 1153 68.1
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1456.8 1144 67.7
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1455.7 1149 66.2
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1455.3 1118 67.7
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1454.5 1122 69.3
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1453.3 1130 69.1
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1452.6 1135 66.3
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1448.7 1118 66.9
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1446.0 1106 67.4
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1437.9 1140 67.4
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1428.3 1127 68.2
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1425.2 1140 69.6
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1424.1 1139 66.5
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1421.8 1151 67.2
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1418.7 1160 64.2
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1410.2 1124 67.4
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1409.8 1152 65.0
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1401.0 1095 65.0
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1400.6 1106 65.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1397.9 1040 66.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1394.8 1101 66.9
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1394.4 1040 66.7
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1392.1 1118 68.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1390.2 1114 69.0
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1385.9 1124 65.8
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1385.5 1094 64.9
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1372.5 1169 63.5
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1369.4 1060 65.0
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1365.1 1104 63.3
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1361.7 1385 54.7
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1359.0 1085 65.4
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1354.7 1079 63.9
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1349.7 1081 63.7
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1349.0 1068 64.0
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1348.6 1066 63.9
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1341.6 1091 63.2
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1330.1 927 74.9
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1319.7 1066 65.0
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1313.1 1072 64.2
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1294.6 1070 62.2
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1274.2 1089 61.2
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1271.5 1006 63.6
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1258.8 1090 62.9
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1251.1 911 69.7
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1242.6 892 76.2
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1239.9 1078 59.1
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1233.8 1077 59.1
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1185.6 1117 58.1
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 0.0e+00 1168.3 1109 58.2
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1160.6 826 73.7
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1134.4 1130 55.8
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1134.0 677 84.3
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1121.7 1036 59.2
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 3.3e-308 1062.0 1077 52.3
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 5.8e-289 998.0 1037 50.7
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 1.7e-288 996.5 783 66.0
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 3.6e-283 978.8 687 76.3
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.5e-278 962.2 964 51.0
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 2.8e-259 899.4 1024 48.1
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.9e-248 862.1 545 81.3
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.9e-248 862.1 545 81.3
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.7e-243 845.9 595 72.8
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.0e-213 748.0 1024 42.2
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.8e-166 590.5 400 78.2
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 6.3e-102 376.7 400 53.5
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 3.1e-64 251.5 201 63.2
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 7.8e-60 236.9 143 80.4
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 5.6e-58 230.7 600 28.3
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.1e-53 216.5 165 67.3
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.6e-52 211.1 209 54.1
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 6.0e-52 210.7 221 51.6
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 2.1e-49 202.2 171 63.2
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 2.3e-43 182.2 189 55.6
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.2e-41 174.1 174 54.6
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.6e-33 149.4 612 24.0
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.4e-32 146.4 170 52.9
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 6.9e-32 144.1 390 28.5
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.2e-28 133.3 121 57.9
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.1e-24 120.2 96 63.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.3e-24 117.9 107 58.9
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 6.2e-17 94.4 310 28.1
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 4.5e-15 88.2 74 63.5
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.6e-12 79.7 68 60.3
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 3.5e-12 78.6 302 27.2
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.0e-11 75.5 82 56.1
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 5.7e-10 71.2 50 54.0
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 9.6e-10 70.5 80 50.0
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 2.1e-09 69.3 120 38.3
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 8.2e-09 67.4 96 43.8
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 5.3e-08 64.7 48 64.6
COL.COLO4_15782 Corchorus olitorius HOM05D004682 ORTHO05D006197 6.9e-08 64.3 113 40.7
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 2.9e-06 58.9 50 52.0
Solyc09g037050.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 8.4e-06 57.4 55 50.9


User provided reference genes

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