Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010952001 Vitis vinifera HOM05D004536 ORTHO05D005628 1.6e-100 369.4 185 100.0
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 2.0e-29 133.3 89 76.4
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 6.3e-28 128.3 89 73.0
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 6.3e-28 128.3 89 73.0
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 6.3e-28 128.3 89 73.0
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 1.1e-27 127.5 89 73.0
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 5.3e-27 125.2 89 71.9
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 1.2e-26 124.0 89 71.9
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 1.2e-26 124.0 89 71.9
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 1.2e-26 124.0 85 75.3
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 1.2e-26 124.0 85 75.3
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 4.5e-26 122.1 89 71.9
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 4.5e-26 122.1 86 72.1
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 5.9e-26 121.7 89 69.7
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 7.7e-26 121.3 89 69.7
Cpa.g.sc9.197 Carica papaya HOM05D004536 ORTHO05D005628 1.7e-25 120.2 89 67.4
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 2.9e-25 119.4 89 68.5
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 8.5e-25 117.9 89 67.4
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 1.1e-24 117.5 95 64.2
Potri.014G132400 Populus trichocarpa HOM05D004536 ORTHO05D005628 1.5e-24 117.1 89 68.5
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 2.5e-24 116.3 90 64.4
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 2.5e-24 116.3 88 70.5
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 2.5e-24 116.3 89 68.5
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 3.2e-24 115.9 95 65.3
Peaxi162Scf00067g00235 Petunia axillaris HOM05D004536 ORTHO05D005628 3.2e-24 115.9 86 70.9
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 4.2e-24 115.5 84 70.2
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 9.4e-24 114.4 95 63.2
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 9.4e-24 114.4 95 63.2
PGSC0003DMG400011389 Solanum tuberosum HOM05D004536 ORTHO05D005628 9.4e-24 114.4 86 69.8
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 1.6e-23 113.6 89 65.2
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 1.6e-23 113.6 86 68.6
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 1.6e-23 113.6 86 68.6
Oeu024513.3 Olea europaea HOM05D004536 ORTHO05D005628 1.6e-23 113.6 88 68.2
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 1.6e-23 113.6 86 68.6
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 1.6e-23 113.6 86 68.6
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 2.1e-23 113.2 89 66.3
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 2.7e-23 112.8 89 67.4
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 2.7e-23 112.8 89 67.4
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 4.7e-23 112.1 86 67.4
CSS0025822 Camellia sinensis var. sinensis HOM05D004536 ORTHO05D005628 6.1e-23 111.7 89 67.4
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 8.0e-23 111.3 95 62.1
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 8.0e-23 111.3 89 66.3
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 8.0e-23 111.3 81 71.6
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 1.0e-22 110.9 95 62.1
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 1.0e-22 110.9 95 62.1
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 1.0e-22 110.9 89 65.2
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 1.4e-22 110.5 89 66.3
BcaC07g42414 Brassica carinata HOM05D004536 ORTHO05D005628 1.4e-22 110.5 95 62.1
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 1.4e-22 110.5 89 64.0
CANSAT25G0282 Cannabis sativa HOM05D004536 ORTHO05D005628 1.4e-22 110.5 89 64.0
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 1.4e-22 110.5 95 62.1
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 1.8e-22 110.2 88 65.9
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 1.8e-22 110.2 89 62.9
Migut.I00234 Erythranthe guttata HOM05D004536 ORTHO05D005628 2.3e-22 109.8 87 66.7
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 2.3e-22 109.8 89 64.0
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 3.0e-22 109.4 87 64.4
Eucgr.H01178 Eucalyptus grandis HOM05D004536 ORTHO05D005628 3.0e-22 109.4 89 64.0
Eucgr.H01182 Eucalyptus grandis HOM05D004536 ORTHO05D005628 3.0e-22 109.4 89 64.0
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 3.0e-22 109.4 86 65.1
Atru.chr5.1224 Acer truncatum HOM05D004536 ORTHO05D005628 4.0e-22 109.0 89 64.0
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 5.2e-22 108.6 95 61.1
Sc17g0003350 Simmondsia chinensis HOM05D004536 ORTHO05D005628 5.2e-22 108.6 89 64.0
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 8.8e-22 107.8 95 62.1
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 8.8e-22 107.8 95 62.1
AL1G12410 Arabidopsis lyrata HOM05D004536 ORTHO05D005628 1.2e-21 107.5 95 60.0
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 1.2e-21 107.5 92 63.0
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 1.2e-21 107.5 95 57.9
Aa31LG1G9600 Aethionema arabicum HOM05D004536 ORTHO05D005628 1.5e-21 107.1 95 58.9
Lj2A1189G43 Lonicera japonica HOM05D004536 ORTHO05D005628 1.5e-21 107.1 85 68.2
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 1.5e-21 107.1 95 60.0
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 1.5e-21 107.1 82 68.3
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 3.3e-21 105.9 95 58.9
Migut.K00643 Erythranthe guttata HOM05D004536 ORTHO05D005628 3.3e-21 105.9 83 67.5
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 3.3e-21 105.9 89 62.9
PSO832G3458 Papaver somniferum HOM05D004536 ORTHO05D005628 4.4e-21 105.5 76 72.4
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 5.7e-21 105.1 89 62.9
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 5.7e-21 105.1 86 62.8
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 5.7e-21 105.1 89 61.8
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 7.5e-21 104.8 89 61.8
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 9.7e-21 104.4 89 62.9
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 9.7e-21 104.4 76 72.4
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 9.7e-21 104.4 86 64.0
SGA_v2.0_scaffold36G14354 Striga asiatica HOM05D004536 ORTHO05D005628 1.3e-20 104.0 89 62.9
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 1.7e-20 103.6 88 64.8
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 2.2e-20 103.2 89 60.7
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 2.8e-20 102.8 75 73.3
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 2.8e-20 102.8 89 60.7
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 3.7e-20 102.4 82 65.9
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 4.8e-20 102.1 93 59.1
Ah.15g093870 Amaranthus hybridus HOM05D000154 ORTHO05D000092 6.3e-20 101.7 77 67.5
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 6.3e-20 101.7 86 62.8
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 6.3e-20 101.7 86 62.8
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 6.3e-20 101.7 84 61.9
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 8.2e-20 101.3 95 58.9
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 1.8e-19 100.1 89 61.8
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 2.4e-19 99.8 89 58.4
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 2.4e-19 99.8 89 62.9
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 7.0e-19 98.2 87 56.3
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 7.0e-19 98.2 86 61.6
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 1.6e-18 97.1 86 61.6
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.6e-18 97.1 86 60.5
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 1.6e-18 97.1 89 58.4
AUR62033185 Chenopodium quinoa HOM05D004536 ORTHO05D005628 2.0e-18 96.7 89 58.4
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 4.5e-18 95.5 89 58.4
MSTRG.12600 Avicennia marina HOM05D004536 ORTHO05D005628 7.7e-18 94.7 89 58.4
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 1.3e-17 94.0 89 60.7
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 5.0e-17 92.0 89 55.1
Migut.I00246 Erythranthe guttata HOM05D004536 ORTHO05D005628 4.2e-16 89.0 85 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1715 Anthoceros agrestis HOM05D004536 ORTHO05D005628 9.4e-16 87.8 75 60.0
Carub.0033s0002 Capsella rubella HOM05D004536 ORTHO05D005628 6.1e-15 85.1 49 81.6
Eucgr.H01185 Eucalyptus grandis HOM05D004536 ORTHO05D005628 1.0e-14 84.3 89 50.6
Migut.I00238 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.8e-14 83.6 86 59.3
SEGI_27037 Sequoiadendron giganteum HOM05D004536 ORTHO05D005628 1.8e-14 83.6 89 51.7
Migut.M00484 Erythranthe guttata HOM05D004536 ORTHO05D005628 2.3e-14 83.2 67 62.7
Mapoly0002s0169 Marchantia polymorpha HOM05D004536 ORTHO05D005628 3.0e-14 82.8 78 52.6
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 2.0e-13 80.1 49 77.6
Pp3c16_16660 Physcomitrium patens HOM05D004536 ORTHO05D005628 2.8e-12 76.3 73 56.2
SHI15387 Sapria himalayana HOM05D004536 ORTHO05D005628 1.1e-11 74.3 69 55.1
VMungo0540G1844 Vigna mungo HOM05D004536 ORTHO05D005628 1.1e-11 74.3 87 47.1
Phvul.001G172200 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 1.4e-11 73.9 87 42.5
SMO116G0459 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 2.4e-11 73.2 74 51.4
FAN20G2283 Fragaria x ananassa HOM05D004536 ORTHO05D005628 5.4e-11 72.0 46 76.1
CBR_g44348 Chara braunii HOM05D004536 ORTHO05D005628 2.9e-09 66.2 74 48.6
PRCOL_00003559 Prasinoderma coloniale HOM05D004536 ORTHO05D005628 1.1e-08 64.3 69 49.3
Sabra02G0151800 Salix brachista HOM05D004536 ORTHO05D005628 9.5e-08 61.2 56 55.4
SMO201G0239 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 3.6e-07 59.3 49 57.1
SMO352G0071 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 4.7e-07 58.9 73 43.8


User provided reference genes

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