Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.3e-210 736.1 355 100.0
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.0e-191 673.3 370 89.7
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 7.6e-139 497.7 444 57.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 7.8e-136 487.6 443 56.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.5e-134 483.4 442 56.6
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 2.8e-133 479.2 443 55.3
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 4.8e-133 478.4 441 56.2
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.4e-132 476.9 440 56.1
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.8e-132 476.5 435 56.1
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.2e-131 473.8 434 56.5
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.5e-131 471.9 444 56.3
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 5.8e-131 471.5 446 55.8
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 9.9e-131 470.7 443 54.2
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 3.8e-130 468.8 435 54.5
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.1e-129 467.2 441 54.9
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 9.3e-129 464.2 435 55.2
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.6e-128 463.4 471 53.3
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 3.5e-128 462.2 444 53.6
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 4.6e-128 461.8 443 54.6
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 6.0e-128 461.5 440 55.0
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.0e-127 460.7 442 53.4
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 1.3e-127 460.3 444 53.6
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.9e-127 458.8 446 51.8
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.1e-127 458.4 444 55.2
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 6.7e-127 458.0 444 53.6
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.9e-126 456.4 444 55.0
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 4.3e-126 455.3 444 53.2
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 5.6e-126 454.9 444 53.4
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 7.4e-126 454.5 436 54.1
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 9.6e-126 454.1 444 53.6
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.3e-125 453.8 444 51.8
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 2.1e-125 453.0 427 56.2
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 2.8e-125 452.6 436 53.7
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.7e-125 452.2 444 53.6
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 3.7e-125 452.2 442 52.9
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.8e-125 451.8 436 53.7
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 8.1e-125 451.1 442 53.2
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.4e-124 450.3 433 54.5
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.4e-124 450.3 436 53.4
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.4e-124 450.3 444 53.4
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 1.8e-124 449.9 444 52.7
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.4e-124 449.5 442 53.4
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 2.4e-124 449.5 444 52.0
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 3.1e-124 449.1 444 52.9
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 4.0e-124 448.7 454 52.2
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 6.9e-124 448.0 436 53.0
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 9.0e-124 447.6 444 52.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 9.0e-124 447.6 489 50.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.5e-123 446.8 437 52.4
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.5e-123 446.8 436 53.9
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.6e-123 446.0 447 52.6
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 3.4e-123 445.7 444 51.8
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 5.8e-123 444.9 444 52.9
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 9.9e-123 444.1 434 53.7
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.7e-122 443.4 444 51.6
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 2.2e-122 443.0 443 52.1
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 3.8e-122 442.2 433 53.1
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 6.4e-122 441.4 424 53.5
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 6.4e-122 441.4 424 53.5
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 6.4e-122 441.4 444 52.0
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.4e-121 440.3 444 51.6
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.9e-121 439.9 444 52.3
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 3.2e-121 439.1 444 51.8
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 7.1e-121 438.0 433 52.4
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 7.1e-121 438.0 433 52.4
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.2e-120 437.2 444 51.8
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 2.1e-120 436.4 442 51.1
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 2.1e-120 436.4 435 52.4
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.0e-119 434.1 436 51.1
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.3e-119 433.7 436 51.4
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.3e-119 433.7 446 49.6
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.3e-119 433.0 444 50.2
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 4.3e-118 428.7 431 51.5
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 7.4e-118 427.9 431 51.7
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 9.6e-118 427.6 451 50.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.3e-117 427.2 443 49.9
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 2.0e-115 419.9 446 50.4
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 4.5e-115 418.7 447 50.1
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.7e-114 416.8 424 51.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.7e-114 416.8 433 51.7
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 2.9e-114 416.0 443 51.2
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.8e-114 415.6 431 50.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 8.4e-114 414.5 426 50.9
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.4e-113 413.7 443 50.3
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 4.6e-112 408.7 418 53.1
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 7.9e-112 407.9 420 50.5
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.9e-110 403.3 348 56.0
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.3e-109 400.6 439 46.7
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 2.6e-107 392.9 400 52.0
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.8e-106 389.0 362 57.7
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 2.5e-105 386.3 444 46.4
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.6e-104 383.6 440 46.4
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.3e-103 379.8 418 49.5
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.5e-102 377.1 364 54.4
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.7e-101 372.5 372 53.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.1e-100 370.9 365 52.6
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 5.3e-100 368.6 441 48.3
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 1.5e-99 367.1 383 50.4
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 5.9e-99 365.2 441 44.7
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 5.0e-98 362.1 438 46.3
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 5.0e-98 362.1 438 46.3
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 5.0e-98 362.1 438 46.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 4.2e-97 359.0 436 48.4
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 7.2e-97 358.2 382 49.2
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 3.7e-93 345.9 388 46.9
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.0e-91 340.1 384 47.9
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 7.7e-91 338.2 367 51.8
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.3e-90 337.4 381 47.5
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.7e-90 337.0 420 45.0
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 2.5e-89 333.2 440 43.9
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.1e-88 330.1 460 41.1
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.2e-85 320.1 455 40.4
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.2e-78 297.7 314 50.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.8e-77 293.1 184 73.4
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 6.3e-77 292.0 184 74.5
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.2e-72 277.7 428 38.6
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.8e-71 273.9 434 36.4
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 1.8e-68 263.8 439 39.2
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 7.7e-67 258.5 405 36.0
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 1.9e-65 253.8 297 49.5
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.6e-64 250.8 428 36.4
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 6.1e-64 248.8 439 33.7
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-63 247.3 306 44.8
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-61 240.7 382 41.1
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.4e-60 237.7 308 43.8
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.6e-54 216.9 178 58.4
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.1e-52 211.5 144 70.1
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.4e-52 211.1 349 40.1
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 5.0e-50 202.6 175 57.7
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 5.4e-44 182.6 208 47.1
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 9.9e-38 161.8 137 56.9
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 9.2e-36 155.2 266 39.8
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.2e-32 144.8 309 33.3
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 2.4e-31 140.6 199 43.2
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 6.8e-31 139.0 102 61.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.7e-27 127.1 485 26.4
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 2.1e-24 117.5 100 57.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.6e-22 110.5 72 65.3
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 9.9e-14 82.0 49 83.7
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.2e-12 76.6 140 33.6
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.8e-10 71.2 68 50.0
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.5e-09 68.2 92 42.4
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.9e-09 67.8 117 34.2
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 5.6e-09 66.2 171 32.7
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 4.8e-08 63.2 159 32.1
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.4e-07 61.6 147 33.3
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 2.4e-07 60.8 136 30.1
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 5.3e-07 59.7 137 34.3
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 6.9e-07 59.3 147 29.9
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 9.0e-07 58.9 137 34.3
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.5e-06 58.2 136 30.9
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 4.5e-06 56.6 145 31.0
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 7.6e-06 55.8 33 78.8
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 7.6e-06 55.8 95 35.8


User provided reference genes

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