Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 0.0e+00 1127.5 537 100.0
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 3.9e-296 1020.8 537 87.0
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 2.1e-294 1015.0 537 86.4
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 4.0e-293 1010.7 537 86.4
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 2.6e-292 1008.1 537 84.7
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 5.8e-292 1006.9 537 85.7
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 7.6e-292 1006.5 537 86.8
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 1.7e-291 1005.4 537 85.5
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 2.2e-291 1005.0 537 85.7
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 6.4e-291 1003.4 537 86.2
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.4e-290 1002.3 537 85.3
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 4.2e-290 1000.7 537 85.1
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 5.4e-290 1000.3 537 85.1
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 5.1e-288 993.8 537 85.1
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 1.9e-287 991.9 537 84.7
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 3.3e-287 991.1 537 84.5
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 6.2e-286 986.9 537 84.4
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 3.1e-285 984.6 537 84.7
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 5.3e-285 983.8 537 84.4
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 1.0e-283 979.5 537 83.8
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 1.0e-283 979.5 537 83.6
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 2.9e-283 978.0 537 83.8
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 8.4e-283 976.5 537 83.2
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 2.7e-281 971.5 537 83.8
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 2.7e-281 971.5 537 83.6
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 3.5e-281 971.1 560 81.2
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 6.0e-281 970.3 537 82.1
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 6.0e-281 970.3 537 82.3
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 6.0e-281 970.3 537 83.1
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 3.9e-280 967.6 536 81.7
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 1.9e-279 965.3 537 81.8
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 3.3e-279 964.5 537 81.4
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.6e-278 962.2 537 81.9
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 2.8e-278 961.4 537 81.6
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 3.7e-278 961.1 563 80.1
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 8.2e-278 959.9 567 78.5
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 1.1e-277 959.5 537 81.6
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 2.4e-277 958.4 537 81.0
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 4.0e-277 957.6 537 81.9
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 6.9e-277 956.8 537 80.8
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 1.5e-276 955.7 537 81.0
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 1.5e-276 955.7 537 81.9
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 2.6e-276 954.9 537 80.8
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 3.4e-276 954.5 537 80.4
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 7.6e-276 953.4 537 80.6
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 2.2e-275 951.8 537 80.8
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 2.2e-275 951.8 537 80.8
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 2.9e-275 951.4 537 80.6
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 8.4e-275 949.9 537 80.4
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 8.4e-275 949.9 558 78.5
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 1.1e-274 949.5 537 80.4
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 1.4e-274 949.1 597 76.0
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 1.9e-274 948.7 537 81.0
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 2.5e-274 948.3 582 75.9
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 1.6e-273 945.7 537 80.4
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 2.7e-273 944.9 537 82.1
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 2.7e-273 944.9 537 81.9
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 7.9e-273 943.3 537 79.3
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 1.0e-272 943.0 576 76.4
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 3.9e-272 941.0 537 80.4
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 1.1e-271 939.5 537 79.9
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 9.7e-271 936.4 536 79.7
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 4.8e-270 934.1 536 79.5
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 1.4e-269 932.6 537 81.0
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 9.0e-269 929.9 599 73.1
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 1.0e-267 926.4 537 81.9
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 1.7e-267 925.6 593 74.0
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 1.4e-266 922.5 547 78.2
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 3.2e-266 921.4 537 79.1
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 5.5e-266 920.6 537 78.0
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 6.7e-264 913.7 514 80.7
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 4.3e-263 911.0 545 77.8
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 5.3e-261 904.0 509 81.5
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 2.5e-258 895.2 537 76.7
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 2.7e-257 891.7 537 79.3
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 1.1e-255 886.3 537 77.7
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 8.2e-254 880.2 467 85.4
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 1.1e-253 879.8 468 86.5
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 5.3e-253 877.5 487 82.1
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 5.3e-253 877.5 747 60.4
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 2.2e-251 872.1 537 75.6
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 8.8e-248 860.1 697 62.8
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 1.3e-246 856.3 540 72.2
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 7.7e-244 847.0 539 71.2
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 8.5e-235 817.0 537 72.6
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 4.2e-234 814.7 537 72.4
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 4.7e-233 811.2 432 85.0
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 7.5e-231 803.9 539 70.7
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 2.0e-223 779.2 492 73.0
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 1.1e-197 693.7 449 74.8
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 1.0e-195 687.2 550 59.8
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 2.2e-190 669.5 369 83.2
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 1.4e-184 650.2 422 70.1
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 9.0e-176 620.9 441 66.4
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 4.5e-175 618.6 586 54.9
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 3.8e-166 589.0 534 56.4
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 3.3e-162 575.9 553 51.5
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 5.9e-159 565.1 556 49.5
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 1.3e-153 547.4 345 73.3
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 7.2e-141 505.0 336 74.1
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 3.8e-118 429.5 416 56.0
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.5e-114 417.5 251 76.9
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 4.6e-103 379.4 201 83.1
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 8.6e-102 375.2 202 82.7
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 1.1e-83 315.1 172 80.8
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 1.2e-79 301.6 169 84.0
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 2.5e-77 293.9 169 81.1
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 5.6e-77 292.7 170 80.6
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 1.4e-75 288.1 174 78.2
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 2.2e-57 227.6 152 70.4
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.5e-53 214.2 119 80.7
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 9.0e-51 205.7 116 78.4
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.1e-48 196.1 104 88.5
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.3e-38 164.5 127 68.5
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.3e-36 158.7 127 66.1
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 2.9e-33 147.5 82 78.0
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-28 131.7 112 63.4
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-28 131.7 112 63.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 1.2e-26 125.6 69 84.1
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 4.5e-26 123.6 68 83.8
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.1e-19 100.9 78 67.9
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.3e-13 80.9 59 67.8
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 3.3e-13 80.9 51 70.6
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 1.4e-11 75.5 43 81.4
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 2.4e-11 74.7 59 61.0
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 4.5e-10 70.5 40 77.5
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 4.5e-10 70.5 40 77.5
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.8e-09 67.4 34 88.2
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 2.5e-08 64.7 42 66.7
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 5.2e-06 57.0 43 58.1


User provided reference genes

Program Settings