Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 0.0e+00 1344.7 692 100.0
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 3.3e-199 699.1 689 55.4
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 3.7e-198 695.7 705 54.8
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 7.5e-191 671.4 686 55.4
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 9.2e-181 637.9 690 53.5
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 2.1e-177 626.7 642 55.0
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 4.1e-173 612.5 745 49.5
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.7e-166 590.5 766 47.3
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.5e-162 577.4 728 47.8
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 3.3e-162 576.2 699 48.1
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 7.3e-162 575.1 735 48.2
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.1e-161 573.5 621 52.2
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.8e-160 570.5 715 48.3
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 5.2e-160 568.9 687 49.5
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 8.9e-160 568.2 631 53.4
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.6e-156 557.4 701 48.5
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.7e-155 553.9 772 44.4
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 5.1e-155 552.4 772 45.2
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 1.5e-154 550.8 698 48.9
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 6.2e-153 545.4 694 46.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.5e-151 540.8 705 47.7
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.4e-149 534.3 651 51.0
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.7e-147 527.3 687 46.0
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 6.6e-147 525.4 705 46.1
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 8.1e-145 518.5 693 44.6
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 6.9e-144 515.4 705 44.7
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-143 513.5 756 43.4
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.6e-143 513.5 756 43.5
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.4e-143 513.1 695 45.6
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.4e-141 506.9 861 39.4
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 4.2e-141 506.1 687 44.8
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.0e-139 501.5 697 46.3
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 8.1e-137 491.9 767 41.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.9e-134 483.4 799 41.8
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 2.9e-134 483.4 687 44.0
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 4.9e-134 482.6 684 44.3
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 6.4e-134 482.3 726 41.2
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-133 481.5 686 42.1
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.9e-133 480.7 870 37.5
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.4e-133 480.3 772 42.0
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 4.2e-133 479.6 718 40.9
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 7.1e-133 478.8 688 43.9
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 9.3e-133 478.4 672 44.8
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.0e-132 475.7 793 41.1
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.3e-131 474.6 720 40.8
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 9.6e-130 468.4 780 40.8
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.1e-128 464.9 852 38.4
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 4.0e-128 463.0 680 41.6
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 7.1e-125 452.2 698 42.6
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.1e-121 440.7 646 43.7
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 5.8e-119 432.6 642 41.1
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 3.8e-118 429.9 566 46.6
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.5e-114 417.2 798 37.7
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.5e-114 417.2 684 40.8
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 3.3e-114 416.8 478 49.6
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.5e-111 407.9 741 37.9
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 5.9e-111 406.0 614 40.9
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 7.2e-109 399.1 803 37.4
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.3e-109 398.7 732 39.3
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 6.1e-108 396.0 720 38.1
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 7.9e-108 395.6 683 38.7
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.3e-107 394.8 679 39.8
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 4.3e-106 389.8 683 38.5
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 6.9e-104 382.5 686 37.6
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 7.7e-103 379.0 370 52.7
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 7.7e-103 379.0 804 35.3
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.9e-101 374.4 722 37.7
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.2e-100 371.7 701 35.9
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.2e-100 371.7 620 38.7
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.4e-99 368.2 779 35.7
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-98 365.2 313 62.6
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 5.7e-98 362.8 685 38.5
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 7.4e-98 362.5 707 37.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 9.7e-98 362.1 688 36.2
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.8e-96 357.8 679 36.8
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.4e-96 357.5 311 62.4
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 5.3e-96 356.3 703 36.1
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 1.2e-95 355.1 793 34.9
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.9e-95 352.8 320 60.0
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.7e-94 351.3 665 35.3
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 2.5e-93 347.4 690 35.7
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 7.2e-93 345.9 700 35.7
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.2e-92 345.1 688 36.2
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 2.7e-92 344.0 690 36.1
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.1e-92 342.8 328 57.6
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 7.9e-92 342.4 690 35.7
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 5.2e-91 339.7 273 63.4
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.7e-89 334.7 396 47.7
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 2.8e-89 334.0 834 32.0
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 4.1e-88 330.1 832 33.1
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.2e-86 324.3 702 34.2
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.8e-86 323.6 724 34.7
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.5e-86 322.8 682 35.2
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.2e-85 320.1 302 59.6
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.3e-83 314.3 713 33.5
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 6.7e-83 312.8 700 34.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.3e-82 310.5 311 54.3
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.3e-81 308.5 570 38.4
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.2e-81 307.8 304 55.6
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 4.1e-80 303.5 321 51.7
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 5.3e-80 303.1 385 46.8
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.2e-78 297.7 728 33.2
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.9e-77 294.7 607 35.1
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-77 294.7 266 60.2
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 4.7e-76 290.0 361 47.4
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.1e-76 289.7 329 50.2
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.8e-75 288.1 305 52.5
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.0e-75 287.3 320 50.6
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 4.0e-75 287.0 381 44.4
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.7e-70 271.6 683 31.3
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.9e-69 268.1 284 51.8
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 9.5e-69 265.8 311 47.6
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 6.3e-65 253.1 335 44.5
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 8.3e-65 252.7 692 32.2
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 9.2e-64 249.2 270 52.2
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.9e-63 246.5 223 59.2
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.9e-62 244.2 439 38.3
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 6.6e-62 243.0 764 29.3
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.6e-60 238.4 369 42.0
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.6e-60 237.3 259 50.2
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.0e-58 231.5 682 30.5
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.2e-57 228.0 614 31.9
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 2.0e-50 204.9 299 42.8
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.4e-50 204.1 606 30.7
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.8e-50 203.4 359 39.6
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.9e-49 200.3 373 37.5
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 8.3e-49 199.5 261 45.2
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-43 182.6 187 54.0
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-43 182.6 187 54.0
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.7e-41 175.3 171 54.4
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 2.1e-36 158.3 132 59.8
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 7.6e-34 149.8 223 43.0
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.7e-33 148.7 311 33.4
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.4e-32 144.8 228 41.7
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.7e-30 138.7 495 27.9
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 3.9e-30 137.5 180 43.3
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 5.1e-30 137.1 123 56.1
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 1.1e-29 136.0 180 43.9
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 5.6e-29 133.7 180 43.3
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 5.6e-29 133.7 349 33.8
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 1.4e-27 129.0 174 43.7
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 6.9e-27 126.7 201 39.3
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.9e-27 126.7 130 52.3
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 5.8e-26 123.6 186 41.4
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 8.4e-25 119.8 686 24.3
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.1e-24 119.4 175 40.0
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 9.3e-24 116.3 103 58.3
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 1.5e-21 109.0 128 46.1
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 1.6e-20 105.5 140 44.3
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 3.4e-18 97.8 135 44.4
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 5.8e-18 97.1 248 30.6
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 2.9e-17 94.7 104 47.1
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 4.9e-17 94.0 129 40.3
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 2.7e-15 88.2 197 33.5
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 3.9e-14 84.3 141 40.4
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 5.8e-10 70.5 102 36.3
BcaC07g42098 Brassica carinata HOM05D004076 ORTHO05D004606 1.8e-06 58.9 73 45.2
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 5.1e-06 57.4 54 46.3
SEGI_07468 Sequoiadendron giganteum HOM05D035915 ORTHO05D385826 6.7e-06 57.0 46 45.7


User provided reference genes

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