Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 4.8e-244 847.4 435 100.0
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 2.9e-76 290.0 450 44.7
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 1.9e-62 244.2 460 41.1
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 2.9e-55 220.3 440 40.7
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 1.6e-53 214.5 468 36.8
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 7.8e-53 212.2 448 38.4
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 2.3e-52 210.7 438 39.0
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 7.6e-48 195.7 439 38.0
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 1.2e-42 178.3 417 37.6
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 2.8e-42 177.2 445 36.0
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 8.9e-41 172.2 407 36.9
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 1.2e-40 171.8 504 33.5
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 9.9e-40 168.7 417 34.8
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 4.2e-38 163.3 507 31.4
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 1.7e-36 157.9 428 34.1
Sc13g0006830 Simmondsia chinensis HOM05D022167 ORTHO05D009787 2.5e-27 127.5 383 31.1
HanXRQChr02g0058051 Helianthus annuus HOM05D008213 ORTHO05D009787 1.8e-25 121.3 391 33.2
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 3.4e-24 117.1 187 43.3
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 3.0e-20 104.0 399 28.8
AUR62015410 Chenopodium quinoa HOM05D022167 ORTHO05D009787 1.5e-19 101.7 376 29.8
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 1.5e-19 101.7 399 29.3
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 5.6e-19 99.8 273 35.2
AUR62002285 Chenopodium quinoa HOM05D022167 ORTHO05D009787 1.6e-18 98.2 361 30.5
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 2.1e-18 97.8 403 28.8
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 4.8e-18 96.7 239 36.4
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.4e-17 95.1 428 28.3
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 2.4e-17 94.4 415 28.2
ECA248G0875 Erigeron canadensis HOM05D000554 ORTHO05D000860 9.0e-17 92.4 294 32.7
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 1.2e-16 92.0 245 34.7
Ca_01266_v3 Cicer arietinum L. HOM05D010840 ORTHO05D009787 3.4e-16 90.5 375 29.1
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 3.4e-16 90.5 292 30.5
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 7.6e-16 89.4 292 30.1
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 1.3e-15 88.6 388 27.3
CsaV3_4G003270 Cucumis sativus L. HOM05D008213 ORTHO05D009787 1.3e-15 88.6 224 35.7
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 1.3e-15 88.6 356 29.2
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 1.3e-15 88.6 242 33.1
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 1.3e-15 88.6 282 31.2
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.3e-15 88.6 406 27.1
arahy.Tifrunner.gnm1.ann1.JQ8CCA Arachis hypogaea HOM05D010840 ORTHO05D009787 6.5e-15 86.3 474 26.4
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 6.5e-15 86.3 415 27.7
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 2.5e-14 84.3 447 27.7
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 7.1e-14 82.8 338 28.7
Ah.07g201850 Amaranthus hybridus HOM05D022167 ORTHO05D009787 1.2e-13 82.0 385 27.8
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.2e-13 82.0 431 28.3
Lsat_1_v5_gn_6_57280 Lactuca sativa HOM05D008213 ORTHO05D009787 3.0e-12 77.4 435 27.6
MBI08_g22655_MAGBIO Magnolia biondii HOM05D008213 ORTHO05D009787 3.0e-12 77.4 405 27.4
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 3.9e-12 77.0 447 25.3
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 6.7e-12 76.3 108 43.5
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 6.7e-12 76.3 444 26.6
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 1.9e-11 74.7 431 28.3
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 1.9e-11 74.7 459 27.5
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 1.9e-11 74.7 243 30.5
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.9e-11 74.7 444 25.2
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 3.3e-11 73.9 279 30.1
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 3.3e-11 73.9 427 26.0
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 4.3e-11 73.6 281 30.6
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 1.3e-10 72.0 279 29.7
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.6e-10 71.6 429 27.5
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 2.8e-10 70.9 228 32.0
TPR.G12768 Trifolium pratense HOM05D010840 ORTHO05D009787 2.8e-10 70.9 266 29.3
TPR.G18857 Trifolium pratense HOM05D010840 ORTHO05D009787 2.8e-10 70.9 204 31.9
ATR0743G282 Amborella trichopoda HOM05D008213 ORTHO05D009787 6.3e-10 69.7 362 28.2
Zm00001eb133750 Zea mays HOM05D065009 ORTHO05D009787 6.3e-10 69.7 316 30.4
Phvul.011G055300 Phaseolus vulgaris HOM05D010840 ORTHO05D009787 1.1e-09 68.9 300 31.0
VMungo1127G1898 Vigna mungo HOM05D010840 ORTHO05D009787 1.1e-09 68.9 232 31.5
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 1.8e-09 68.2 262 30.2
Atru.chr3.1540 Acer truncatum HOM05D022167 ORTHO05D009787 2.4e-09 67.8 220 30.9
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 3.1e-09 67.4 430 27.0
Os12g0230133 Oryza sativa ssp. japonica HOM05D065009 ORTHO05D009787 3.1e-09 67.4 326 28.5
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 4.1e-09 67.0 430 27.4
Lalb_Chr22g0352191 Lupinus albus HOM05D010840 ORTHO05D009787 6.9e-09 66.2 236 33.9
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 9.0e-09 65.9 217 30.4
Glyma.15G030900 Glycine max HOM05D010840 ORTHO05D009787 1.2e-08 65.5 184 34.8
VMungo1080G1829 Vigna mungo HOM05D002632 ORTHO05D002881 1.2e-08 65.5 153 35.9
Medtr2g098610 Medicago truncatula HOM05D010840 ORTHO05D009787 2.6e-08 64.3 196 32.7
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 4.5e-08 63.5 241 30.3
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 5.9e-08 63.2 438 25.1
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 5.9e-08 63.2 438 25.1
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 1.3e-07 62.0 416 24.3
Medtr2g098620 Medicago truncatula HOM05D010840 ORTHO05D009787 1.3e-07 62.0 196 30.1
PSO675G1160 Papaver somniferum HOM05D008213 ORTHO05D009787 1.3e-07 62.0 448 25.4
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 2.2e-07 61.2 412 24.8
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 6.5e-07 59.7 431 25.8
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 2.5e-06 57.8 186 28.0
Lj3P205T14 Lonicera japonica HOM05D008213 ORTHO05D009787 2.5e-06 57.8 111 37.8
Psat1g007360 Pisum sativum HOM05D010840 ORTHO05D009787 4.2e-06 57.0 258 29.5
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 7.2e-06 56.2 395 22.8
Lj3g0021471 Lotus japonicus HOM05D010840 ORTHO05D009787 7.2e-06 56.2 167 29.9


User provided reference genes

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