Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.2e-45 185.3 92 100.0
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 6.8e-23 110.5 64 84.4
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 8.3e-21 103.6 64 76.6
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 1.1e-20 103.2 64 79.7
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.1e-20 103.2 64 75.0
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 9.1e-20 100.1 60 81.7
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 9.1e-20 100.1 60 78.3
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.6e-19 99.4 63 74.6
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 2.0e-19 99.0 63 74.6
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 2.0e-19 99.0 60 78.3
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 3.5e-19 98.2 60 78.3
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 5.9e-19 97.4 60 76.7
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.9e-19 97.4 60 76.7
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.9e-19 97.4 60 76.7
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 5.9e-19 97.4 60 78.3
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 5.9e-19 97.4 60 78.3
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 5.9e-19 97.4 60 78.3
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 7.7e-19 97.1 60 75.0
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 7.7e-19 97.1 60 76.7
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.0e-18 96.7 60 76.7
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.0e-18 96.7 60 76.7
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.0e-18 96.7 64 71.9
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-18 96.3 77 63.6
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.3e-18 96.3 63 74.6
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 1.3e-18 96.3 69 68.1
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.7e-18 95.9 60 73.3
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.2e-18 95.5 59 78.0
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.2e-18 95.5 60 76.7
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 2.2e-18 95.5 60 76.7
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.2e-18 95.5 60 76.7
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.2e-18 95.5 60 76.7
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.2e-18 95.5 61 73.8
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.9e-18 95.1 59 78.0
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 5.0e-18 94.4 60 71.7
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 5.0e-18 94.4 59 74.6
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 5.0e-18 94.4 61 73.8
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 5.0e-18 94.4 61 73.8
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 6.5e-18 94.0 63 69.8
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 6.5e-18 94.0 63 69.8
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 6.5e-18 94.0 60 73.3
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 6.5e-18 94.0 56 78.6
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 8.5e-18 93.6 60 73.3
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 8.5e-18 93.6 60 73.3
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 8.5e-18 93.6 60 75.0
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 8.5e-18 93.6 60 71.7
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.1e-17 93.2 63 69.8
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.1e-17 93.2 60 73.3
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.1e-17 93.2 64 68.8
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 1.1e-17 93.2 62 71.0
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.1e-17 93.2 63 71.4
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.1e-17 93.2 60 75.0
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.1e-17 93.2 64 68.8
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.5e-17 92.8 60 73.3
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 1.5e-17 92.8 59 74.6
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.9e-17 92.4 62 69.4
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.9e-17 92.4 60 73.3
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 2.5e-17 92.0 59 76.3
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.5e-17 92.0 55 81.8
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 2.5e-17 92.0 60 73.3
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.5e-17 92.0 57 77.2
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 2.5e-17 92.0 64 67.2
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 3.2e-17 91.7 60 71.7
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 3.2e-17 91.7 60 71.7
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 3.2e-17 91.7 60 73.3
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 5.5e-17 90.9 55 80.0
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 5.5e-17 90.9 55 80.0
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 5.5e-17 90.9 64 64.1
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 7.2e-17 90.5 60 71.7
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 7.2e-17 90.5 55 80.0
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.2e-16 89.7 56 76.8
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 1.2e-16 89.7 61 72.1
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.6e-16 89.4 60 70.0
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.6e-16 89.4 60 68.3
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 2.1e-16 89.0 55 78.2
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 3.6e-16 88.2 60 65.0
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 4.7e-16 87.8 57 70.2
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 4.7e-16 87.8 60 70.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 4.7e-16 87.8 60 70.0
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 4.7e-16 87.8 60 68.3
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 4.7e-16 87.8 57 71.9
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 4.7e-16 87.8 60 68.3
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 6.1e-16 87.4 60 70.0
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 6.1e-16 87.4 60 70.0
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 8.0e-16 87.0 57 73.7
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.4e-15 86.3 57 70.2
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.4e-15 86.3 59 69.5
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 3.0e-15 85.1 56 71.4
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 3.0e-15 85.1 55 74.5
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 5.2e-15 84.3 60 66.7
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 6.8e-15 84.0 57 68.4
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 6.8e-15 84.0 57 68.4
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 8.8e-15 83.6 65 61.5
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 8.8e-15 83.6 61 63.9
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-14 83.2 57 66.7
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.2e-14 83.2 60 63.3
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 1.2e-14 83.2 60 63.3
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.5e-14 82.8 57 66.7
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 1.5e-14 82.8 57 66.7
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.5e-14 82.8 57 66.7
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 1.5e-14 82.8 57 66.7
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.5e-14 82.8 60 68.3
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.5e-14 82.8 57 66.7
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.5e-14 82.8 57 66.7
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.0e-14 82.4 55 67.3
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 2.0e-14 82.4 57 64.9
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.0e-14 82.4 55 67.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.6e-14 82.0 59 67.8
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.6e-14 82.0 55 67.3
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 2.6e-14 82.0 55 67.3
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.6e-14 82.0 55 67.3
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.4e-14 81.6 55 69.1
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 4.4e-14 81.3 57 64.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 4.4e-14 81.3 57 64.9
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 4.4e-14 81.3 55 65.5
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.4e-14 81.3 55 67.3
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.7e-13 79.3 55 63.6
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.7e-13 79.3 60 61.7
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.2e-13 79.0 57 68.4
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 8.3e-13 77.0 52 67.3
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.4e-12 75.5 45 75.6
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 4.1e-12 74.7 56 66.1
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.2e-11 73.2 55 65.5
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.3e-10 69.7 57 59.6
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.9e-10 68.6 56 62.5
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 5.0e-10 67.8 61 55.7
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 7.3e-09 63.9 47 68.1
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.6e-08 62.8 55 52.7
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.8e-07 59.3 40 70.0
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.0e-06 55.8 45 53.3
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 3.4e-06 55.1 42 71.4


User provided reference genes

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