Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 9.8e-74 280.0 140 100.0
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 1.8e-30 136.3 84 77.4
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 3.9e-30 135.2 82 76.8
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 8.7e-30 134.0 82 75.6
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 8.7e-30 134.0 82 75.6
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 1.9e-29 132.9 82 74.4
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 1.9e-29 132.9 80 75.0
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 2.5e-29 132.5 80 77.5
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 2.5e-29 132.5 82 75.6
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 2.5e-29 132.5 80 77.5
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 3.3e-29 132.1 81 72.8
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 4.3e-29 131.7 80 76.2
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 4.3e-29 131.7 80 76.2
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 4.3e-29 131.7 82 73.2
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 5.6e-29 131.3 82 76.8
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 5.6e-29 131.3 82 74.4
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 7.4e-29 131.0 82 74.4
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 9.6e-29 130.6 82 74.4
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 9.6e-29 130.6 80 73.8
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 9.6e-29 130.6 82 73.2
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 1.6e-28 129.8 77 77.9
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 1.6e-28 129.8 82 72.0
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 2.1e-28 129.4 82 73.2
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 2.1e-28 129.4 82 75.6
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 2.8e-28 129.0 82 72.0
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 2.8e-28 129.0 83 68.7
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 2.8e-28 129.0 83 68.7
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 2.8e-28 129.0 83 68.7
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 2.8e-28 129.0 82 70.7
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 4.8e-28 128.3 82 72.0
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 4.8e-28 128.3 82 69.5
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 4.8e-28 128.3 82 70.7
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 4.8e-28 128.3 82 72.0
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 4.8e-28 128.3 82 73.2
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 6.2e-28 127.9 82 72.0
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 6.2e-28 127.9 82 72.0
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 6.2e-28 127.9 82 72.0
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 6.2e-28 127.9 82 70.7
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 6.2e-28 127.9 82 72.0
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 8.1e-28 127.5 82 70.7
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 8.1e-28 127.5 82 70.7
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 8.1e-28 127.5 82 70.7
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 8.1e-28 127.5 75 78.7
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 8.1e-28 127.5 82 72.0
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 8.1e-28 127.5 82 70.7
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 8.1e-28 127.5 80 73.8
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 1.1e-27 127.1 82 70.7
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 1.1e-27 127.1 80 70.0
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 1.1e-27 127.1 82 70.7
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 1.1e-27 127.1 82 70.7
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 1.1e-27 127.1 82 73.2
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.1e-27 127.1 80 70.0
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 1.4e-27 126.7 82 70.7
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 1.4e-27 126.7 77 75.3
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 1.4e-27 126.7 82 76.8
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 1.4e-27 126.7 82 70.7
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.8e-27 126.3 82 68.3
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 1.8e-27 126.3 82 73.2
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 3.1e-27 125.6 82 69.5
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 3.1e-27 125.6 82 69.5
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 3.1e-27 125.6 75 77.3
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 3.1e-27 125.6 82 70.7
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 3.1e-27 125.6 82 68.3
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 3.1e-27 125.6 75 76.0
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.0e-27 125.2 82 69.5
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.0e-27 125.2 82 69.5
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.0e-27 125.2 82 69.5
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.0e-27 125.2 82 69.5
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 4.0e-27 125.2 82 69.5
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 4.0e-27 125.2 82 68.3
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 5.3e-27 124.8 82 69.5
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 5.3e-27 124.8 82 70.7
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 5.3e-27 124.8 80 70.0
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 6.9e-27 124.4 80 70.0
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 6.9e-27 124.4 82 69.5
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 6.9e-27 124.4 75 74.7
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 6.9e-27 124.4 78 73.1
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 6.9e-27 124.4 82 69.5
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 9.0e-27 124.0 82 69.5
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 9.0e-27 124.0 75 76.0
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 1.2e-26 123.6 75 77.3
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 1.2e-26 123.6 76 73.7
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 1.2e-26 123.6 78 73.1
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 1.2e-26 123.6 75 73.3
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 2.0e-26 122.9 75 73.3
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 2.0e-26 122.9 75 74.7
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 2.0e-26 122.9 75 72.0
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 2.6e-26 122.5 81 71.6
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 3.4e-26 122.1 82 67.1
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 3.4e-26 122.1 77 72.7
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 3.4e-26 122.1 76 75.0
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 4.5e-26 121.7 82 69.5
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 4.5e-26 121.7 82 70.7
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 5.8e-26 121.3 75 72.0
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 5.8e-26 121.3 75 72.0
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 5.8e-26 121.3 75 72.0
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 5.8e-26 121.3 75 72.0
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 5.8e-26 121.3 75 72.0
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 5.8e-26 121.3 75 72.0
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 5.8e-26 121.3 76 73.7
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 7.6e-26 120.9 80 66.2
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 9.9e-26 120.6 75 72.0
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 9.9e-26 120.6 75 72.0
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 9.9e-26 120.6 75 72.0
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 9.9e-26 120.6 75 69.3
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 9.9e-26 120.6 77 70.1
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 1.3e-25 120.2 75 72.0
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 1.7e-25 119.8 76 72.4
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 2.2e-25 119.4 76 68.4
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 2.2e-25 119.4 75 69.3
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 2.9e-25 119.0 75 72.0
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 3.8e-25 118.6 75 73.3
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 3.8e-25 118.6 75 72.0
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 4.9e-25 118.2 75 70.7
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 6.4e-25 117.9 75 72.0
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 6.4e-25 117.9 75 72.0
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 8.4e-25 117.5 76 71.1
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 1.4e-24 116.7 75 72.0
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 2.4e-24 115.9 80 70.0
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 5.5e-24 114.8 76 67.1
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 7.1e-24 114.4 80 62.5
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 1.2e-23 113.6 76 65.8
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 2.1e-23 112.8 82 67.1
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 4.6e-23 111.7 75 68.0
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 1.8e-22 109.8 81 58.0
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 5.1e-22 108.2 76 63.2
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 2.5e-21 105.9 76 60.5
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 3.3e-21 105.5 76 61.8
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 8.1e-20 100.9 76 59.2
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 8.1e-20 100.9 53 94.3
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 6.9e-19 97.8 73 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 6.5e-17 91.3 71 56.3
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 1.8e-14 83.2 78 51.3
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 1.3e-12 77.0 69 49.3
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 6.3e-12 74.7 50 60.0
MBI15_g47666_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 3.4e-10 68.9 76 48.7
MBI15_g35018_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.1e-08 63.9 37 73.0
Aa31LG9G8470 Aethionema arabicum HOM05D005477 ORTHO05D006721 3.6e-07 58.9 37 67.6
Nitab4.5_0000217g0090 Nicotiana tabacum HOM05D005477 ORTHO05D006721 3.9e-06 55.5 40 62.5


User provided reference genes

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