Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 7.1e-110 400.6 201 100.0
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 9.1e-81 303.9 213 77.9
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 5.9e-80 301.2 210 78.6
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 7.7e-80 300.8 207 77.8
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.2e-79 299.3 209 78.5
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 5.0e-79 298.1 211 77.3
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 5.0e-79 298.1 211 77.3
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 4.2e-78 295.0 217 74.2
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 7.2e-78 294.3 206 77.7
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 9.4e-78 293.9 206 76.2
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 2.1e-77 292.7 213 75.6
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.7e-77 292.4 215 74.4
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 3.6e-77 292.0 224 72.8
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 1.4e-76 290.0 206 76.7
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 1.8e-76 289.7 206 75.7
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 1.2e-75 287.0 206 76.7
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 2.0e-75 286.2 210 73.8
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 3.3e-75 285.4 218 72.5
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 3.3e-75 285.4 210 72.4
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 4.8e-74 281.6 212 72.6
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 6.3e-74 281.2 210 73.3
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 1.8e-73 279.6 201 75.6
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.8e-73 279.6 215 73.0
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 3.1e-73 278.9 214 71.5
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 4.1e-73 278.5 202 75.7
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 4.1e-73 278.5 257 63.0
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 7.0e-73 277.7 224 70.1
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 1.6e-72 276.6 203 72.4
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 3.5e-72 275.4 205 72.2
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 4.5e-72 275.0 214 71.0
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 7.7e-72 274.2 207 69.6
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 2.2e-71 272.7 214 70.6
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 5.0e-71 271.6 202 74.3
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 6.5e-71 271.2 224 67.4
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 8.5e-71 270.8 207 69.1
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 8.5e-71 270.8 203 72.9
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.1e-70 270.4 214 71.0
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 2.5e-70 269.2 212 71.2
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 4.2e-70 268.5 208 69.2
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 7.2e-70 267.7 203 71.4
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 9.4e-70 267.3 216 69.9
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.2e-69 266.9 213 68.1
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.6e-69 266.5 207 70.5
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.6e-69 266.5 207 70.5
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 2.1e-69 266.2 201 71.6
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 4.7e-69 265.0 225 67.6
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 4.7e-69 265.0 204 69.1
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 6.1e-69 264.6 225 68.0
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 6.1e-69 264.6 213 66.7
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 1.0e-68 263.8 210 68.6
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 1.0e-68 263.8 202 73.8
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 2.3e-68 262.7 210 69.0
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 4.0e-68 261.9 206 73.3
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 4.0e-68 261.9 251 62.2
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 8.8e-68 260.8 222 64.9
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.2e-67 260.4 223 65.9
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.2e-67 260.4 210 67.1
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 3.4e-67 258.8 146 89.7
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 5.7e-67 258.1 220 68.2
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 1.3e-66 256.9 227 66.1
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.3e-66 256.9 211 68.7
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.7e-66 256.5 218 65.1
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 2.8e-66 255.8 144 88.9
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 2.8e-66 255.8 209 69.9
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 4.8e-66 255.0 196 71.9
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 4.8e-66 255.0 208 66.3
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.1e-65 253.8 220 65.0
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 2.7e-64 249.2 209 67.0
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 5.9e-64 248.1 206 68.0
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 5.9e-64 248.1 201 67.2
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 1.0e-63 247.3 207 64.7
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.0e-63 247.3 190 68.9
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 1.3e-63 246.9 224 63.4
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.3e-63 246.1 182 72.0
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 2.9e-63 245.7 207 65.2
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 6.6e-63 244.6 216 65.7
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 6.6e-63 244.6 185 73.5
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 8.6e-63 244.2 207 64.7
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.1e-62 243.8 236 60.6
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.5e-62 243.4 212 63.7
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 1.5e-62 243.4 212 63.7
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 1.5e-62 243.4 212 63.7
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 2.5e-62 242.7 285 53.3
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 3.3e-62 242.3 212 63.7
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 4.2e-62 241.9 219 61.6
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 7.2e-62 241.1 214 63.6
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 9.5e-62 240.7 207 63.8
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 1.2e-61 240.4 206 63.6
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 1.2e-61 240.4 200 68.0
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 2.1e-61 239.6 211 65.4
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 2.8e-61 239.2 204 63.7
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 6.1e-61 238.0 205 62.9
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 8.0e-61 237.7 207 63.8
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 1.0e-60 237.3 208 61.1
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.0e-60 235.7 194 68.6
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 8.9e-60 234.2 206 64.1
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 8.9e-60 234.2 186 67.2
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.2e-59 233.8 130 88.5
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 1.5e-59 233.4 212 61.8
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 2.0e-59 233.0 156 78.2
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 4.4e-59 231.9 208 60.6
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 2.2e-58 229.6 203 66.5
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 2.8e-58 229.2 218 61.5
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 3.7e-58 228.8 213 58.7
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 3.7e-58 228.8 186 71.5
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 4.9e-58 228.4 188 64.4
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 1.4e-57 226.9 201 64.7
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 5.4e-57 224.9 141 81.6
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 9.2e-57 224.2 175 70.9
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.3e-55 220.3 160 75.6
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 3.3e-54 215.7 153 72.5
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 5.6e-54 214.9 202 60.4
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 7.3e-54 214.5 167 65.3
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 7.3e-54 214.5 208 60.1
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 9.5e-54 214.2 221 57.9
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 2.1e-53 213.0 120 87.5
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 6.1e-53 211.5 188 62.2
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.4e-52 210.3 202 63.4
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 1.8e-52 209.9 201 60.7
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 1.2e-51 207.2 215 52.6
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 3.4e-51 205.7 189 62.4
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 4.4e-51 205.3 166 68.7
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 7.5e-51 204.5 191 60.2
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 2.9e-50 202.6 170 65.9
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 3.7e-50 202.2 190 58.9
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 4.1e-49 198.7 217 52.5
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.2e-48 197.2 162 69.1
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.0e-47 194.1 195 56.4
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.6e-45 186.8 158 63.9
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 6.8e-44 181.4 151 63.6
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 1.5e-43 180.3 209 52.6
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.5e-43 180.3 161 61.5
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 2.0e-43 179.9 201 53.7
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 2.0e-43 179.9 193 55.4
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 5.8e-43 178.3 133 68.4
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-42 177.2 198 55.6
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 3.7e-42 175.6 137 67.9
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 1.9e-41 173.3 116 77.6
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 3.2e-41 172.6 180 56.1
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 4.1e-41 172.2 171 57.3
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.5e-38 163.7 152 61.8
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 1.5e-38 163.7 166 54.8
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 2.1e-37 159.8 133 59.4
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 1.1e-28 131.0 221 39.8
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 2.2e-26 123.2 132 48.5
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 4.7e-21 105.5 62 87.1
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.2e-19 100.9 74 75.7
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 1.9e-17 93.6 88 56.8
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.2e-17 92.8 177 35.0
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 1.3e-15 87.4 116 39.7
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 1.7e-10 70.5 51 66.7
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 4.9e-10 68.9 73 58.9
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 5.4e-09 65.5 101 47.5
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 4.6e-08 62.4 39 71.8


User provided reference genes

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