Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 0.0e+00 1428.3 709 100.0
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 0.0e+00 1084.3 689 77.8
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 0.0e+00 1083.2 691 76.1
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 0.0e+00 1076.6 696 76.3
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 1.2e-305 1052.7 715 73.1
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 3.6e-305 1051.2 717 72.8
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.3e-304 1048.5 703 72.7
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 3.9e-304 1047.7 678 74.8
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 1.5e-303 1045.8 713 72.2
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 9.7e-303 1043.1 691 74.4
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.7e-302 1042.3 692 72.8
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 2.8e-302 1041.6 713 72.5
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 3.1e-301 1038.1 688 74.3
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 8.8e-296 1020.0 741 68.4
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 3.3e-295 1018.1 748 68.3
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 7.4e-295 1016.9 713 70.8
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 7.4e-295 1016.9 670 74.6
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 7.4e-295 1016.9 746 70.5
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.3e-294 1016.1 694 72.5
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 9.1e-293 1010.0 712 70.1
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.9e-291 1005.0 712 69.2
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 5.5e-290 1000.7 713 69.6
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 1.2e-289 999.6 671 73.0
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.8e-288 995.7 714 71.1
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.5e-287 992.6 689 71.1
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 2.8e-286 988.4 710 68.6
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 8.2e-286 986.9 711 68.9
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 3.1e-285 984.9 692 70.4
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 1.2e-284 983.0 695 70.4
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 3.8e-283 978.0 684 69.3
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 3.8e-283 978.0 691 69.2
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 4.2e-282 974.5 708 68.4
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 2.7e-281 971.8 665 70.1
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 2.7e-281 971.8 691 69.5
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 4.7e-281 971.1 710 68.6
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 3.0e-280 968.4 669 69.2
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 4.0e-280 968.0 693 69.1
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 6.7e-280 967.2 689 69.1
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 1.2e-279 966.5 687 69.0
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 1.5e-279 966.1 745 65.1
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 2.6e-279 965.3 713 67.0
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 7.5e-279 963.8 690 69.3
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 7.5e-279 963.8 688 67.7
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 1.3e-278 963.0 695 69.2
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 1.7e-278 962.6 736 65.8
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 4.8e-278 961.1 673 68.9
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 4.8e-278 961.1 656 70.6
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 8.2e-278 960.3 688 68.0
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 3.1e-277 958.4 688 67.9
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 3.1e-277 958.4 688 68.0
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 7.0e-277 957.2 617 77.0
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 9.1e-277 956.8 688 67.7
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 4.5e-276 954.5 702 67.5
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 5.9e-276 954.1 711 67.5
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.0e-275 953.4 688 67.4
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 1.7e-275 952.6 688 67.3
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.7e-275 952.6 708 66.8
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.2e-275 952.2 689 68.8
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 6.5e-275 950.7 683 69.3
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.5e-274 949.5 688 67.3
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.9e-274 949.1 708 66.0
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 5.5e-274 947.6 690 68.4
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 2.7e-273 945.3 688 67.4
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 3.6e-273 944.9 684 68.6
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.0e-272 941.8 689 67.3
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 6.8e-272 940.6 681 67.0
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.5e-271 939.5 688 66.9
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.0e-271 939.1 670 69.3
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 7.5e-271 937.2 674 68.4
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 1.8e-269 932.6 679 67.3
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.9e-266 922.5 687 67.0
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 9.5e-266 920.2 687 67.0
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.8e-265 918.7 699 66.2
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 2.0e-263 912.5 652 69.3
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 4.9e-262 907.9 683 66.8
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 1.6e-257 892.9 721 62.8
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 5.2e-256 887.9 670 66.1
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 3.4e-255 885.2 669 67.1
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.5e-250 869.8 726 62.3
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 4.9e-246 854.7 670 62.1
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 3.2e-245 852.0 667 62.7
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 3.0e-243 845.5 546 74.2
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 3.3e-242 842.0 683 63.0
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 3.6e-241 838.6 685 61.2
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 5.2e-240 834.7 618 68.0
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 1.7e-235 819.7 504 78.8
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 3.6e-233 812.0 978 47.5
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 7.1e-229 797.7 633 64.0
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 6.0e-228 794.7 712 59.6
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.3e-227 793.5 486 78.6
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 1.1e-224 783.9 681 58.4
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.1e-224 783.9 571 68.1
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.3e-219 766.1 518 72.0
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 1.2e-212 743.8 692 57.1
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.1e-194 684.1 581 59.4
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 6.9e-192 674.9 636 56.0
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 9.7e-186 654.4 430 72.8
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 2.0e-183 646.7 659 50.4
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 4.4e-170 602.4 683 46.3
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 2.1e-156 557.0 359 75.2
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 4.8e-153 545.8 419 62.1
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.8e-144 517.3 370 66.2
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 4.4e-138 496.1 523 46.8
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 9.5e-133 478.4 394 62.7
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 1.1e-125 454.9 385 60.5
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 1.8e-123 447.6 328 67.4
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.8e-113 413.3 439 48.1
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.3e-108 398.3 278 72.7
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.6e-108 396.7 311 62.7
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 4.3e-101 373.2 284 64.4
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 4.8e-100 369.8 279 67.7
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 3.2e-96 357.1 758 35.0
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 8.7e-94 349.0 352 51.4
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.8e-91 341.3 434 44.5
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 3.0e-86 323.9 233 68.7
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 6.5e-73 279.6 430 39.5
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 4.6e-71 273.5 285 50.5
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-70 270.8 385 38.7
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 1.2e-66 258.8 658 30.9
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 7.4e-61 239.6 548 32.1
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 4.4e-45 187.2 279 39.8
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-44 185.7 364 37.6
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 8.5e-41 172.9 137 60.6
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 5.2e-38 163.7 116 69.8
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 2.6e-37 161.4 101 79.2
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.4e-35 155.6 111 73.0
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.1e-35 154.5 214 43.0
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.2e-34 152.5 226 40.7
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.1e-32 146.0 223 40.8
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 4.7e-31 140.6 125 60.0
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 2.5e-24 118.2 86 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 3.4e-21 107.8 73 67.1
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 9.2e-19 99.8 400 25.0
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 4.6e-18 97.4 135 39.3
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 6.2e-15 87.0 159 39.0
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 1.1e-14 86.3 60 75.0
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.8e-14 85.5 427 23.7
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.1e-14 84.7 64 62.5
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 8.9e-14 83.2 91 45.1
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.5e-13 82.4 45 77.8
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.4e-13 81.3 53 64.2
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.4e-13 80.9 46 73.9
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 6.4e-12 77.0 43 76.7
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.2e-11 74.7 97 44.3
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 5.4e-11 73.9 68 47.1
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 6.6e-09 67.0 41 75.6
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 1.2e-07 62.8 53 62.3
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 2.3e-06 58.5 247 27.5


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