Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 9.3e-113 410.2 208 100.0
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.0e-107 392.5 208 94.7
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.6e-107 392.1 208 95.2
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 94.7
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 93.8
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 94.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 2.9e-106 388.7 207 93.7
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 94.7
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 94.7
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 2.9e-106 388.7 206 94.7
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 3.8e-106 388.3 206 94.2
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 94.2
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 94.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 93.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 93.8
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 6.5e-106 387.5 206 94.2
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 6.5e-106 387.5 206 94.2
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.5e-106 387.5 208 93.8
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 6.5e-106 387.5 210 93.8
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 94.2
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.3
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.3
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.3
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 94.2
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.3
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.3
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 92.8
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 93.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 94.2
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 4.2e-105 384.8 206 93.7
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 5.5e-105 384.4 206 91.3
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.8
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 93.8
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.8
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 93.3
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 92.3
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 91.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.6e-104 382.9 206 93.2
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.6e-104 382.9 207 92.3
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 92.2
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 92.8
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 91.8
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 92.3
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 4.6e-104 381.3 207 91.8
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 4.6e-104 381.3 213 91.5
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 91.8
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 91.3
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 6.1e-104 380.9 208 92.8
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 7.9e-104 380.6 206 92.7
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 92.3
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 91.8
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 92.8
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.8e-103 379.4 207 91.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.3e-103 379.0 208 92.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.0e-103 378.6 208 92.3
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 5.1e-103 377.9 209 91.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 6.7e-103 377.5 206 90.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 6.7e-103 377.5 208 90.4
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 8.8e-103 377.1 207 90.8
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 8.8e-103 377.1 209 91.4
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 8.8e-103 377.1 218 88.5
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 90.9
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 91.3
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.5e-102 376.3 207 91.3
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.5e-102 376.3 206 91.7
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.5e-102 375.6 206 89.8
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.3e-102 375.2 209 90.9
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.3e-102 375.2 209 90.9
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 9.7e-102 373.6 208 90.4
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 90.9
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 89.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 6.3e-101 370.9 208 89.4
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 8.2e-101 370.5 208 89.4
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 8.2e-101 370.5 207 88.9
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 8.2e-101 370.5 205 90.7
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 88.5
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.4e-100 369.8 207 88.9
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 88.5
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 88.9
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 88.9
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 88.9
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.1e-100 368.2 205 90.2
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.0
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.0
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.5e-99 366.3 207 90.8
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 5.9e-99 364.4 206 89.8
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-98 363.6 196 93.9
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.5
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.2e-98 362.5 208 90.4
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 87.5
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.1e-97 360.1 206 85.4
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.4e-97 359.8 208 87.0
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.9e-97 359.4 208 85.6
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.2e-97 358.2 206 85.0
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-96 355.5 207 87.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-96 355.5 207 87.4
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 2.7e-96 355.5 208 87.5
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-95 353.6 207 87.0
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 9.7e-94 347.1 207 85.0
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.3e-93 346.7 208 85.1
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 5.3e-92 341.3 208 85.6
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.6e-91 339.0 178 94.4
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.0e-90 337.0 179 93.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.2e-90 335.9 206 84.5
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 6.5e-90 334.3 177 93.8
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 4.7e-88 328.2 177 92.7
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 6.7e-87 324.3 190 85.8
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.5e-86 323.2 207 82.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.5e-86 323.2 179 87.7
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.6e-86 322.4 177 89.3
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.2e-85 319.3 208 74.5
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 4.1e-84 315.1 208 80.8
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 3.0e-79 298.9 167 87.4
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 8.8e-79 297.4 205 75.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 9.7e-78 293.9 207 75.8
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 4.8e-77 291.6 156 92.9
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 6.3e-77 291.2 156 92.3
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.4e-71 273.5 232 65.5
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.4e-68 263.5 203 63.1
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.8e-68 263.1 206 68.9
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 2.7e-67 259.2 202 62.9
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 4.5e-67 258.5 200 61.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.0e-63 247.3 198 61.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 5.2e-63 245.0 162 79.6
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 4.5e-59 231.9 197 56.3
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.6e-58 228.0 120 92.5
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 5.6e-57 224.9 133 88.7
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.7e-53 213.4 207 52.2
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-52 209.5 148 72.3
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 2.4e-52 209.5 151 74.2
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.4e-52 209.5 207 52.2
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 2.3e-50 203.0 209 57.9
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 6.2e-48 194.9 197 47.7
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 5.8e-46 188.3 196 45.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.5e-43 179.1 230 43.0
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.3e-42 176.4 160 64.4
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.9e-41 173.3 208 52.4
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-40 170.6 98 84.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 3.5e-35 152.5 206 48.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 8.1e-32 141.4 96 78.1
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.4e-31 139.8 74 94.6
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-31 139.4 99 74.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.3e-29 134.0 187 37.4
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.4e-29 131.7 83 79.5
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 6.4e-29 131.7 92 72.8
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 4.6e-27 125.6 135 55.6
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 9.6e-25 117.9 60 90.0
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.1e-23 114.4 82 69.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 5.3e-23 112.1 73 79.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 6.4e-21 105.1 60 83.3
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 2.9e-13 79.7 61 63.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.8e-10 70.5 62 66.1
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 4.8e-08 62.4 39 71.8
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 3.1e-07 59.7 38 71.1
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 4.0e-07 59.3 58 63.8
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 7.6e-06 55.1 137 23.4


User provided reference genes

Program Settings