Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010244001 Vitis vinifera HOM05D007496 ORTHO05D009479 1.4e-29 135.2 65 100.0
Sed0014874 Sechium edule HOM05D007496 ORTHO05D009479 2.1e-17 94.7 62 72.6
Haze_01569 Corylus avellana HOM05D007496 ORTHO05D009479 3.6e-17 94.0 59 74.6
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 6.2e-17 93.2 64 67.2
Cfa021290 Carpinus fangiana HOM05D007496 ORTHO05D009479 6.2e-17 93.2 59 74.6
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 1.1e-16 92.4 65 66.2
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 1.1e-16 92.4 64 65.6
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 1.8e-16 91.7 64 65.6
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 1.8e-16 91.7 59 71.2
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 4.0e-16 90.5 64 64.1
CSS0042252 Camellia sinensis var. sinensis HOM05D007496 ORTHO05D009479 5.2e-16 90.1 59 69.5
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 5.2e-16 90.1 65 64.6
MD13G1010200 Malus domestica HOM05D007496 ORTHO05D009479 6.8e-16 89.7 52 82.7
CiPaw.05G161700 Carya illinoinensis HOM05D007496 ORTHO05D009479 8.9e-16 89.4 58 74.1
CiPaw.05G161800 Carya illinoinensis HOM05D007496 ORTHO05D009479 1.5e-15 88.6 57 75.4
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 1.5e-15 88.6 60 65.0
Actinidia13702 Actinidia chinensis HOM05D007496 ORTHO05D009479 2.0e-15 88.2 63 71.4
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 2.6e-15 87.8 64 64.1
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 2.6e-15 87.8 64 64.1
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 2.6e-15 87.8 64 64.1
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 2.6e-15 87.8 63 66.7
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 3.4e-15 87.4 64 62.5
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 3.4e-15 87.4 64 64.1
Actinidia38410 Actinidia chinensis HOM05D007496 ORTHO05D009479 4.4e-15 87.0 58 72.4
QL03p041883 Quercus lobata HOM05D007496 ORTHO05D009479 4.4e-15 87.0 56 73.2
CDE12G0616 Ceratophyllum demersum HOM05D007496 ORTHO05D009479 5.8e-15 86.7 64 59.4
Potri.010G098400 Populus trichocarpa HOM05D007496 ORTHO05D009479 5.8e-15 86.7 58 70.7
Ciclev10004591m.g Citrus clementina HOM05D007496 ORTHO05D009479 9.9e-15 85.9 58 69.0
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 9.9e-15 85.9 64 60.9
Aa31LG2G7790 Aethionema arabicum HOM05D007496 ORTHO05D009479 2.2e-14 84.7 59 66.1
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 2.2e-14 84.7 64 62.5
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 2.2e-14 84.7 59 69.5
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 2.2e-14 84.7 59 69.5
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 2.9e-14 84.3 64 62.5
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 3.8e-14 84.0 59 67.8
Cc10_g12620 Coffea canephora HOM05D007496 ORTHO05D009479 4.9e-14 83.6 64 65.6
Dinv28147 Davidia involucrata HOM05D007496 ORTHO05D009479 4.9e-14 83.6 47 80.9
Prupe.1G342600 Prunus persica HOM05D007496 ORTHO05D009479 4.9e-14 83.6 52 76.9
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 1.1e-13 82.4 51 76.5
FAN07G1579 Fragaria x ananassa HOM05D007496 ORTHO05D009479 1.1e-13 82.4 52 76.9
VMungo0251G1188 Vigna mungo HOM05D007496 ORTHO05D009479 1.1e-13 82.4 63 61.9
RcHm_v2.0_Chr4g0446071 Rosa chinensis HOM05D007496 ORTHO05D009479 1.4e-13 82.0 52 76.9
Sabra10G0070900 Salix brachista HOM05D007496 ORTHO05D009479 1.4e-13 82.0 52 73.1
Aqoxy5G03884 Aquilegia oxysepala HOM05D007496 ORTHO05D009479 1.9e-13 81.6 47 76.6
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 1.9e-13 81.6 63 61.9
FvH4_4g36310 Fragaria vesca HOM05D007496 ORTHO05D009479 1.9e-13 81.6 51 76.5
FAN12G2685 Fragaria x ananassa HOM05D007496 ORTHO05D009479 1.9e-13 81.6 51 76.5
FAN17G2862 Fragaria x ananassa HOM05D007496 ORTHO05D009479 1.9e-13 81.6 51 76.5
Migut.L00784 Erythranthe guttata HOM05D007496 ORTHO05D009479 3.2e-13 80.9 61 62.3
FAN17G2962 Fragaria x ananassa HOM05D007496 ORTHO05D009479 5.4e-13 80.1 52 75.0
Lalb_Chr07g0188091 Lupinus albus HOM05D007496 ORTHO05D009479 9.2e-13 79.3 52 73.1
Nn1g01012 Nelumbo nucifera HOM05D007496 ORTHO05D009479 9.2e-13 79.3 47 74.5
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 9.2e-13 79.3 52 69.2
TAR636G1662 Trochodendron aralioides HOM05D007496 ORTHO05D009479 1.2e-12 79.0 52 73.1
Lj4g0018028 Lotus japonicus HOM05D007496 ORTHO05D009479 1.6e-12 78.6 52 71.2
CAN.G1013.31 Capsicum annuum HOM05D007496 ORTHO05D009479 2.7e-12 77.8 66 59.1
Phvul.002G186700 Phaseolus vulgaris HOM05D007496 ORTHO05D009479 4.6e-12 77.0 57 66.7
Lalb_Chr13g0293071 Lupinus albus HOM05D007496 ORTHO05D009479 1.0e-11 75.9 52 67.3
Actinidia13695 Actinidia chinensis HOM05D007496 ORTHO05D018209 1.7e-11 75.1 51 70.6
MBI04_g09492_MAGBIO Magnolia biondii HOM05D007496 ORTHO05D009479 2.3e-11 74.7 47 74.5
TPR.G34766 Trifolium pratense HOM05D007496 ORTHO05D009479 3.0e-11 74.3 55 63.6
arahy.Tifrunner.gnm1.ann1.0U1JLE Arachis hypogaea HOM05D007496 ORTHO05D009479 1.1e-10 72.4 52 65.4
arahy.Tifrunner.gnm1.ann1.UN0AT6 Arachis hypogaea HOM05D007496 ORTHO05D009479 1.1e-10 72.4 52 65.4
Psat0s1866g0040 Pisum sativum HOM05D007496 ORTHO05D009479 2.5e-10 71.2 56 62.5
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 3.3e-10 70.9 64 51.6
Gohir.D12G156100 Gossypium hirsutum HOM05D007496 ORTHO05D009479 4.3e-10 70.5 51 62.7
Gorai.008G168700 Gossypium raimondii HOM05D007496 ORTHO05D009479 4.3e-10 70.5 51 62.7
PGSC0003DMG401017024 Solanum tuberosum HOM05D007496 ORTHO05D009479 4.3e-10 70.5 52 65.4
PGSC0003DMG402017024 Solanum tuberosum HOM05D007496 ORTHO05D009479 4.3e-10 70.5 52 65.4
Solyc02g021270.3 Solanum lycopersicum HOM05D007496 ORTHO05D009479 5.6e-10 70.1 56 60.7
Ca_18211_v3 Cicer arietinum L. HOM05D007496 ORTHO05D009479 9.6e-10 69.3 52 59.6
Sopen02g005740 Solanum pennellii HOM05D007496 ORTHO05D009479 9.6e-10 69.3 52 63.5
SalBow2G0206 Salvia bowleyana HOM05D007496 ORTHO05D009479 1.3e-09 68.9 51 64.7
Gohir.A12G152700 Gossypium hirsutum HOM05D007496 ORTHO05D009479 2.8e-09 67.8 47 63.8
TPR.G33063 Trifolium pratense HOM05D007496 ORTHO05D009479 4.8e-09 67.0 44 70.5
SGA_v2.0_scaffold169G38601 Striga asiatica HOM05D007496 ORTHO05D009479 6.2e-09 66.6 52 59.6
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 1.4e-08 65.5 47 63.8
PSO063G5648 Papaver somniferum HOM05D007496 ORTHO05D009479 1.8e-08 65.1 44 63.6
PSO782G5018 Papaver somniferum HOM05D007496 ORTHO05D009479 1.8e-08 65.1 44 63.6
HPP92_012737 Vanilla planifolia HOM05D007496 ORTHO05D009479 3.1e-08 64.3 47 57.4
MSTRG.20095 Avicennia marina HOM05D007496 ORTHO05D009479 5.3e-08 63.5 51 58.8
Ah.02g120040 Amaranthus hybridus HOM05D007496 ORTHO05D009479 6.9e-08 63.2 47 59.6
Thecc.02G296100 Theobroma cacao HOM05D007496 ORTHO05D009479 9.0e-08 62.8 36 77.8
Nitab4.5_0002936g0010 Nicotiana tabacum HOM05D007496 ORTHO05D009479 1.2e-07 62.4 52 57.7
Nitab4.5_0000415g0080 Nicotiana tabacum HOM05D007496 ORTHO05D009479 1.5e-07 62.0 47 61.7
COL.COLO4_27514 Corchorus olitorius HOM05D007496 ORTHO05D009479 2.0e-07 61.6 46 60.9
SGA_v2.0_scaffold4G02164 Striga asiatica HOM05D007496 ORTHO05D009479 2.6e-07 61.2 47 61.7
Peaxi162Scf00655g00032 Petunia axillaris HOM05D007496 ORTHO05D009479 5.8e-07 60.1 46 60.9
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 7.6e-07 59.7 36 69.4
Sc03g0005490 Simmondsia chinensis HOM05D007496 ORTHO05D009479 1.7e-06 58.5 42 69.0


User provided reference genes

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