Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 0.0e+00 2193.7 1107 100.0
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 0.0e+00 1249.6 1108 58.6
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 0.0e+00 1241.5 1078 59.4
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 0.0e+00 1236.5 1101 58.2
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 0.0e+00 1235.3 1063 60.0
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 0.0e+00 1197.2 1110 55.9
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 0.0e+00 1179.9 1103 56.1
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 0.0e+00 1169.1 1105 55.9
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 0.0e+00 1166.4 1122 55.7
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 0.0e+00 1157.1 1114 55.4
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 0.0e+00 1140.2 1098 53.6
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 0.0e+00 1122.8 1111 54.2
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 0.0e+00 1114.8 1106 53.7
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 0.0e+00 1108.6 1111 53.5
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 0.0e+00 1108.2 1115 53.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 0.0e+00 1105.9 1055 54.9
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 0.0e+00 1085.9 1111 52.6
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 0.0e+00 1083.9 1116 52.8
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 0.0e+00 1078.9 1085 54.6
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 2.3e-311 1072.4 1100 52.6
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 2.3e-311 1072.4 1104 52.3
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 3.3e-310 1068.5 1110 51.9
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 9.8e-310 1067.0 1420 44.6
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 1.8e-308 1062.8 1114 51.5
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 7.0e-308 1060.8 1156 51.6
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 1.9e-305 1052.7 1106 51.0
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 2.1e-304 1049.3 1109 50.5
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 3.2e-300 1035.4 1116 50.6
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 1.0e-298 1030.4 1098 50.0
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 1.1e-297 1026.9 1109 50.2
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 4.0e-295 1018.5 1114 49.1
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 2.9e-293 1012.3 1115 50.5
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 2.0e-291 1006.1 1113 49.3
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 5.6e-289 998.0 1112 49.7
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 8.9e-287 990.7 894 57.3
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 8.9e-287 990.7 1115 51.7
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 6.4e-285 984.6 1060 49.8
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 6.6e-282 974.5 896 55.9
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.5e-281 973.4 1097 49.0
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 2.8e-280 969.1 1095 48.9
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 6.2e-280 968.0 1015 51.0
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 8.1e-280 967.6 1192 47.3
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 3.1e-279 965.7 1094 48.5
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 4.9e-277 958.4 1095 48.2
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 5.4e-276 954.9 1089 49.2
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 1.6e-275 953.4 1111 48.2
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 1.1e-271 940.6 1059 49.3
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 3.0e-266 922.5 1124 47.2
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 5.1e-266 921.8 1110 46.3
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 5.1e-266 921.8 1084 47.0
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 1.1e-265 920.6 1118 46.9
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 4.8e-264 915.2 913 53.9
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 2.6e-262 909.4 1093 45.8
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 5.8e-262 908.3 1052 47.1
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 4.9e-261 905.2 1121 45.2
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 1.5e-257 893.6 826 57.7
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 1.4e-252 877.1 1155 44.0
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 1.0e-250 870.9 1121 46.6
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 2.8e-248 862.8 1181 43.4
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 5.1e-242 842.0 1113 44.5
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 6.7e-242 841.6 1092 45.5
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 7.4e-241 838.2 1045 44.6
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 4.1e-239 832.4 1112 44.0
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 3.8e-237 825.9 901 49.7
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 7.1e-236 821.6 1107 43.7
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 4.3e-233 812.4 1102 42.8
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 1.3e-232 810.8 1091 43.5
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 1.1e-231 807.7 1103 42.5
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 7.7e-230 801.6 1114 43.3
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 8.5e-229 798.1 1113 43.8
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 1.2e-227 794.3 1050 43.4
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 1.6e-227 793.9 933 47.1
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 2.8e-224 783.1 957 47.2
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 1.9e-220 770.4 1107 42.3
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 8.8e-218 761.5 1196 39.0
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 1.6e-206 724.2 772 50.3
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 1.6e-203 714.1 521 67.4
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 4.0e-202 709.5 1074 39.9
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 2.2e-192 677.2 1234 35.8
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 4.1e-191 672.9 810 47.0
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 1.3e-181 641.3 891 42.5
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 8.6e-181 638.6 891 42.3
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 2.0e-177 627.5 842 43.9
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 9.2e-175 618.6 850 43.9
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 1.4e-170 604.7 497 64.2
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 1.3e-168 598.2 784 46.4
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 3.3e-164 583.6 477 60.2
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 1.6e-163 581.3 1082 35.8
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.1e-156 558.5 792 42.2
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 1.6e-155 554.7 625 52.2
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 2.5e-148 530.8 1259 31.1
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 4.3e-148 530.0 764 43.6
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 3.0e-141 507.3 697 44.0
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 3.8e-128 463.8 747 38.8
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 1.8e-117 428.3 624 41.3
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 7.4e-116 422.9 489 45.6
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 2.8e-115 421.0 831 36.3
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 1.1e-111 409.1 550 40.7
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.3e-99 369.0 522 44.3
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 1.2e-97 362.5 467 44.3
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 3.8e-96 357.5 351 56.7
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 1.5e-95 355.5 1164 27.1
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 8.0e-94 349.7 525 41.3
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 9.7e-92 342.8 277 58.8
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 3.7e-83 314.3 346 48.3
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 1.9e-71 275.4 257 54.5
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 2.1e-70 271.9 349 45.3
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 2.9e-59 235.0 198 58.1
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 3.7e-59 234.6 306 41.8
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 4.1e-58 231.1 205 54.1
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 7.0e-58 230.3 266 47.0
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 2.3e-56 225.3 268 45.9
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 7.3e-55 220.3 214 51.9
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 9.5e-55 219.9 196 56.6
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 4.7e-54 217.6 197 55.3
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 2.2e-51 208.8 1068 24.1
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 2.4e-50 205.3 182 56.6
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 1.0e-48 199.9 197 54.8
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.7e-48 199.1 200 51.5
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 2.3e-48 198.7 1033 24.8
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 8.4e-43 180.3 194 50.5
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.6e-38 164.9 135 60.0
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.0e-32 146.7 132 57.6
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 9.6e-31 140.2 156 44.9
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 9.9e-28 130.2 123 57.7
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 9.0e-21 107.1 114 49.1
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 3.5e-17 95.1 144 41.7
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 8.7e-16 90.5 106 48.1
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 6.2e-14 84.3 179 34.6
FvH4_4g15932 Fragaria vesca HOM05D005682 ORTHO05D007050 1.5e-12 79.7 113 42.5
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 1.6e-09 69.7 177 27.1
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 2.3e-08 65.9 631 21.4
MBI06_g06674_MAGBIO Magnolia biondii HOM05D002497 ORTHO05D002697 3.0e-08 65.5 150 31.3
Zm00001eb297620 Zea mays HOM05D002497 ORTHO05D002697 3.0e-08 65.5 163 28.8
Os01g0886000 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 3.9e-08 65.1 159 30.8
ClCG11G004610 Citrullus lanatus HOM05D002497 ORTHO05D002697 6.7e-08 64.3 155 30.3
QL02p039295 Quercus lobata HOM05D002497 ORTHO05D002697 6.7e-08 64.3 154 31.8
SMO141G0017 Selaginella moellendorffii HOM05D002497 ORTHO05D002697 6.7e-08 64.3 147 25.2
Aqoxy3G03548 Aquilegia oxysepala HOM05D002497 ORTHO05D002697 1.1e-07 63.5 151 31.1
SHI16731 Sapria himalayana HOM05D002497 ORTHO05D002697 1.1e-07 63.5 153 31.4
Gohir.D02G102400 Gossypium hirsutum HOM05D002497 ORTHO05D002697 1.5e-07 63.2 152 27.6
HanXRQChr15g0488431 Helianthus annuus HOM05D002497 ORTHO05D002697 1.9e-07 62.8 147 29.9
Medtr3g005140 Medicago truncatula HOM05D002497 ORTHO05D002697 1.9e-07 62.8 149 28.9
PGSC0003DMG400027809 Solanum tuberosum HOM05D002497 ORTHO05D002697 1.9e-07 62.8 149 28.2
Sopen11g013750 Solanum pennellii HOM05D002497 ORTHO05D002697 2.5e-07 62.4 149 27.5
unitig_37.g13086 Utricularia gibba HOM05D002497 ORTHO05D002697 2.5e-07 62.4 151 31.1
ATR0598G145 Amborella trichopoda HOM05D002497 ORTHO05D002697 3.3e-07 62.0 158 27.2
Nn3g17368 Nelumbo nucifera HOM05D002497 ORTHO05D002697 4.3e-07 61.6 151 30.5
Sabra04G0066500 Salix brachista HOM05D002497 ORTHO05D002697 4.3e-07 61.6 152 28.3
Solyc11g030710.2 Solanum lycopersicum HOM05D002497 ORTHO05D002697 4.3e-07 61.6 149 27.5
FvH4_6g37553 Fragaria vesca HOM05D005682 ORTHO05D007050 7.4e-07 60.8 61 50.8
PGR004G1115 Punica granatum HOM05D002497 ORTHO05D002697 7.4e-07 60.8 154 30.5
CsaV3_5G038380 Cucumis sativus L. HOM05D002497 ORTHO05D002697 9.7e-07 60.5 163 27.6
Mapoly0072s0055 Marchantia polymorpha HOM05D002497 ORTHO05D002697 9.7e-07 60.5 147 29.9
Zm00001eb366020 Zea mays HOM05D002497 ORTHO05D002697 9.7e-07 60.5 159 29.6
Lsat_1_v5_gn_4_170140 Lactuca sativa HOM05D002497 ORTHO05D002697 1.3e-06 60.1 148 30.4
vmacro05673 Vaccinium macrocarpon HOM05D002497 ORTHO05D002697 1.6e-06 59.7 155 29.0
MELO3C022019.2 Cucumis melo HOM05D002497 ORTHO05D002697 2.1e-06 59.3 153 28.8
Eucgr.F02964 Eucalyptus grandis HOM05D002497 ORTHO05D002697 2.1e-06 59.3 154 26.6
Gohir.D09G011200 Gossypium hirsutum HOM05D002497 ORTHO05D002697 2.1e-06 59.3 154 30.5
Gorai.006G013000 Gossypium raimondii HOM05D002497 ORTHO05D002697 2.1e-06 59.3 158 29.7
Rhsim10G0034600 Rhododendron simsii HOM05D002497 ORTHO05D002697 2.1e-06 59.3 155 29.7
Rhsim12G0004500 Rhododendron simsii HOM05D002497 ORTHO05D002697 3.7e-06 58.5 151 27.2
SalBow1G1406 Salvia bowleyana HOM05D002497 ORTHO05D002697 3.7e-06 58.5 157 29.9
SalBow1G7503 Salvia bowleyana HOM05D002497 ORTHO05D002697 3.7e-06 58.5 157 29.9
vmacro00923 Vaccinium macrocarpon HOM05D002497 ORTHO05D002697 3.7e-06 58.5 154 29.2
vmacro22751 Vaccinium macrocarpon HOM05D002497 ORTHO05D002697 3.7e-06 58.5 154 29.2
Actinidia29395 Actinidia chinensis HOM05D002497 ORTHO05D002697 4.8e-06 58.2 152 27.0
Gohir.A09G012300 Gossypium hirsutum HOM05D002497 ORTHO05D002697 4.8e-06 58.2 158 29.7
Manes.02G050400 Manihot esculenta HOM05D002497 ORTHO05D002697 4.8e-06 58.2 155 28.4
Pp3c11_23680 Physcomitrium patens HOM05D002497 ORTHO05D002697 4.8e-06 58.2 150 27.3
ATR1089G083 Amborella trichopoda HOM05D002497 ORTHO05D002697 6.3e-06 57.8 151 23.8
Ca_06367_v3 Cicer arietinum L. HOM05D002497 ORTHO05D002697 6.3e-06 57.8 152 27.0
PGR042G2340 Punica granatum HOM05D002497 ORTHO05D002697 6.3e-06 57.8 152 26.3
Lalb_Chr18g0049291 Lupinus albus HOM05D002497 ORTHO05D002697 8.2e-06 57.4 235 23.4
Solyc02g067050.3 Solanum lycopersicum HOM05D002497 ORTHO05D002697 8.2e-06 57.4 148 29.7


User provided reference genes

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