Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 8.1e-91 337.0 167 100.0
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 5.6e-60 234.6 124 89.5
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 9.6e-60 233.8 124 89.5
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 3.7e-59 231.9 127 86.6
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.4e-58 229.9 125 88.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.4e-58 229.9 125 88.0
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.4e-58 229.9 124 89.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.8e-58 229.6 127 85.8
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.2e-57 226.9 127 84.3
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.2e-57 226.9 144 72.9
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.5e-57 226.5 125 87.2
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.5e-57 226.5 125 85.6
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 4.5e-57 224.9 122 86.1
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 9.9e-57 223.8 122 87.7
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.2e-56 222.6 126 82.5
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 2.2e-56 222.6 125 86.4
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.9e-56 221.5 121 86.0
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 4.9e-56 221.5 128 83.6
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.4e-55 219.9 127 83.5
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.4e-55 219.9 127 83.5
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.9e-55 219.5 121 86.0
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.9e-55 219.5 124 83.9
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.2e-55 218.4 127 81.1
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.2e-55 218.4 127 81.1
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 4.2e-55 218.4 126 82.5
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 5.5e-55 218.0 122 82.8
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 7.1e-55 217.6 122 84.4
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.1e-55 217.6 128 79.7
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 9.3e-55 217.2 127 81.1
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.2e-54 216.9 123 83.7
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 1.2e-54 216.9 124 83.1
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.2e-54 216.9 127 80.3
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.6e-54 216.5 122 83.6
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.6e-54 216.5 122 84.4
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 2.1e-54 216.1 127 79.5
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.1e-54 216.1 122 82.0
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 2.7e-54 215.7 127 81.1
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.7e-54 215.7 122 81.1
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.5e-54 215.3 122 82.8
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 3.5e-54 215.3 122 82.8
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 4.6e-54 214.9 122 81.1
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 4.6e-54 214.9 122 81.1
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 6.0e-54 214.5 122 84.4
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.0e-54 214.5 122 82.0
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 6.0e-54 214.5 122 83.6
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 7.9e-54 214.2 123 82.9
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 1.0e-53 213.8 128 80.5
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.8e-53 213.0 123 82.1
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.8e-53 213.0 122 80.3
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.8e-53 213.0 122 81.1
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.3e-53 212.6 122 81.1
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 2.3e-53 212.6 122 81.1
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 2.3e-53 212.6 124 81.5
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 2.3e-53 212.6 124 81.5
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 2.3e-53 212.6 125 79.2
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.9e-53 211.8 123 81.3
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.9e-53 211.8 127 78.7
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 8.7e-53 210.7 127 78.7
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 8.7e-53 210.7 124 82.3
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 8.7e-53 210.7 124 82.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 8.7e-53 210.7 127 80.3
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 1.1e-52 210.3 126 80.2
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.5e-52 209.9 122 82.8
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.5e-52 209.9 122 82.8
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.5e-52 209.9 125 78.4
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.9e-52 209.5 123 81.3
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.5e-52 209.1 127 77.2
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.5e-52 209.1 128 75.8
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.3e-52 208.8 121 81.0
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 3.3e-52 208.8 122 81.1
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.3e-52 208.4 122 82.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.3e-52 208.4 122 82.0
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 4.3e-52 208.4 122 80.3
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 5.6e-52 208.0 121 80.2
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 5.6e-52 208.0 127 76.4
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.4e-52 207.6 124 81.5
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 7.4e-52 207.6 123 81.3
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 7.4e-52 207.6 125 80.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 9.6e-52 207.2 122 80.3
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.6e-52 207.2 122 82.0
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.6e-51 206.5 122 77.9
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 2.1e-51 206.1 116 83.6
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.8e-51 205.7 116 83.6
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 2.8e-51 205.7 127 77.2
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 6.2e-51 204.5 127 75.6
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.4e-50 203.4 125 76.0
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.8e-50 203.0 122 77.9
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.8e-50 203.0 122 77.9
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.8e-50 203.0 126 75.4
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.4e-50 202.6 122 77.9
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 3.1e-50 202.2 122 77.9
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.1e-50 202.2 127 76.4
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 3.1e-50 202.2 122 76.2
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 4.0e-50 201.8 122 77.0
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.0e-50 201.8 122 80.3
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 5.3e-50 201.4 122 77.9
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 5.3e-50 201.4 122 77.9
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 5.3e-50 201.4 122 77.9
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 5.3e-50 201.4 122 77.9
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 9.0e-50 200.7 122 77.9
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 9.0e-50 200.7 123 78.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.2e-49 200.3 122 77.0
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.2e-49 200.3 122 77.0
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 7.6e-49 197.6 123 77.2
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.7e-48 196.4 111 81.1
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 3.8e-48 195.3 122 74.6
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 3.8e-48 195.3 123 78.0
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 8.4e-48 194.1 123 75.6
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.4e-47 193.4 124 79.8
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.6e-46 189.9 172 57.6
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.7e-46 189.1 121 71.9
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.9e-44 183.0 105 81.9
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 4.1e-42 175.3 105 80.0
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 2.6e-41 172.6 96 83.3
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.5e-36 156.8 103 76.7
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.3e-34 148.3 83 78.3
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 3.4e-33 145.6 84 83.3
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.0e-32 144.1 82 82.9
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.0e-29 134.0 78 85.9
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.8e-26 123.2 81 74.1
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 5.9e-25 118.2 88 63.6
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.3e-24 117.1 103 56.3
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 5.5e-23 111.7 89 61.8
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.7e-22 109.4 60 88.3
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 6.1e-22 108.2 122 50.8
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 5.7e-20 101.7 83 54.2
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.7e-19 99.0 77 70.1
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.3e-19 98.2 64 70.3
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.8e-18 96.7 64 71.9
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.4e-13 80.5 81 51.9
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.8e-13 80.1 114 47.4
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 8.8e-13 77.8 54 70.4
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 7.7e-09 64.7 37 75.7
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.9e-08 62.8 39 69.2
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 5.0e-08 62.0 56 44.6
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 5.5e-07 58.5 55 61.8


User provided reference genes

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