Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 3.6e-266 921.0 465 100.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 4.5e-208 728.0 459 80.6
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.9e-191 672.2 492 70.9
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 4.2e-190 668.3 460 74.6
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.4e-188 663.3 463 73.2
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.2e-187 660.2 459 73.6
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.5e-187 659.8 453 74.0
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.4e-185 653.3 460 74.3
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.4e-185 653.3 459 71.9
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 4.1e-185 651.7 463 73.2
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 4.1e-185 651.7 460 72.6
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 5.4e-185 651.4 482 72.2
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 2.0e-184 649.4 455 73.0
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 3.5e-184 648.7 459 73.2
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 5.9e-184 647.9 461 71.1
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.0e-183 647.1 461 71.6
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 8.6e-183 644.0 460 72.2
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.1e-182 643.7 451 73.2
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.1e-182 643.7 474 72.2
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.5e-182 643.3 461 70.7
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.5e-182 642.5 461 70.9
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.3e-182 642.1 460 71.1
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 3.6e-181 638.6 460 72.0
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.8e-180 636.3 459 71.7
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 4.4e-179 631.7 497 67.2
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 5.8e-179 631.3 455 71.4
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.4e-177 626.7 460 70.4
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.9e-177 626.3 458 70.3
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.3e-175 620.2 474 69.2
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 8.6e-175 617.5 497 65.4
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.1e-174 617.1 526 63.7
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 7.3e-174 614.4 455 69.2
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.6e-173 612.1 459 70.6
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.1e-172 610.5 457 68.3
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 5.2e-172 608.2 444 69.4
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 7.5e-171 604.4 435 72.4
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 1.3e-167 593.6 456 67.8
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 8.6e-167 590.9 450 68.4
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 4.3e-166 588.6 467 66.8
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 7.3e-166 587.8 452 66.4
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 9.5e-166 587.4 460 67.0
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 1.2e-165 587.0 449 67.5
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.2e-165 587.0 476 66.0
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 4.7e-165 585.1 454 67.6
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 3.1e-164 582.4 459 66.4
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 4.0e-164 582.0 462 66.5
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 4.0e-164 582.0 457 67.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 5.2e-164 581.6 461 65.7
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 5.2e-164 581.6 474 66.0
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 6.8e-164 581.3 454 67.2
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 8.9e-164 580.9 462 67.1
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 8.9e-164 580.9 462 64.9
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.2e-163 580.5 461 65.9
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.2e-163 580.5 451 66.5
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.5e-163 580.1 445 66.7
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 4.4e-163 578.6 460 67.0
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 4.4e-163 578.6 460 64.8
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 8.4e-162 574.3 460 65.9
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 6.0e-160 568.2 462 64.5
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 6.0e-160 568.2 469 65.2
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 7.8e-160 567.8 448 65.6
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.3e-159 567.0 449 64.8
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 5.6e-158 561.6 447 64.7
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 1.8e-156 556.6 474 62.2
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.4e-156 556.2 449 66.6
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.1e-156 555.8 476 62.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 4.0e-156 555.4 454 63.9
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 5.2e-156 555.1 531 58.2
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 3.4e-155 552.4 459 63.8
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 2.9e-154 549.3 428 66.4
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.1e-153 547.4 461 63.1
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.2e-153 545.4 458 62.0
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.2e-152 543.9 460 60.9
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 2.7e-152 542.7 458 61.6
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 6.6e-151 538.1 451 61.6
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 1.9e-150 536.6 447 62.6
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.5e-150 536.2 458 61.6
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 7.3e-150 534.6 433 63.5
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 1.3e-149 533.9 447 62.2
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 1.3e-149 533.9 459 61.0
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.6e-149 533.5 478 60.7
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 1.1e-148 530.8 458 60.5
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 2.4e-148 529.6 459 59.9
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 3.1e-148 529.3 401 67.8
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 2.0e-147 526.6 455 62.4
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 2.9e-146 522.7 446 60.3
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.9e-145 520.0 425 65.6
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 9.3e-145 517.7 459 59.0
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.3e-143 513.8 457 61.1
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.7e-143 513.5 446 63.9
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 8.7e-143 511.1 458 60.3
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.1e-142 510.8 460 59.1
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.1e-142 510.8 460 59.1
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.5e-142 510.4 444 59.9
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 9.6e-142 507.7 456 60.1
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.3e-141 507.3 455 61.3
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 1.6e-141 506.9 446 58.7
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 8.1e-141 504.6 446 58.7
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.5e-139 500.4 446 58.3
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 7.6e-139 498.0 446 57.6
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 4.9e-138 495.4 475 56.4
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 2.1e-133 479.9 395 64.8
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.8e-133 479.6 473 56.2
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 8.1e-133 478.0 469 55.0
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 4.0e-132 475.7 478 55.2
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.2e-122 443.4 460 54.3
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 6.5e-114 415.2 386 56.5
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.4e-113 414.1 376 60.1
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 1.2e-107 394.4 308 66.6
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 2.5e-105 386.7 452 46.5
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.0e-103 381.3 308 66.6
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 2.3e-103 380.2 378 57.1
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 7.4e-102 375.2 487 44.6
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 2.1e-96 357.1 521 40.7
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.2e-91 341.3 316 59.5
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.7e-90 337.4 472 42.2
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 7.7e-83 312.0 621 34.5
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 2.7e-75 287.0 525 38.5
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 3.6e-56 223.4 470 33.6
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.5e-54 218.0 456 31.6
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 5.4e-52 209.5 496 30.8
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.8e-47 194.5 154 65.6
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.2e-43 181.8 258 47.3
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.6e-43 179.9 256 42.2
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 8.7e-34 149.1 229 41.9
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 7.1e-28 129.4 110 60.0
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 7.9e-27 125.9 190 45.8
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 3.0e-26 124.0 190 45.3
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 3.4e-22 110.5 84 69.0
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.3e-21 108.6 74 64.9
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 2.4e-20 104.4 163 42.3
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 3.3e-17 94.0 123 46.3
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 6.2e-16 89.7 233 31.3
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 4.0e-15 87.0 64 64.1
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 2.2e-13 81.3 117 47.9
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 3.5e-11 73.9 63 58.7
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 6.0e-11 73.2 110 41.8
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 6.7e-10 69.7 112 42.0
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 3.3e-09 67.4 59 61.0
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 3.7e-08 63.9 145 32.4
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.7e-08 63.9 39 71.8
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.4e-07 62.0 34 82.4
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 5.3e-07 60.1 93 41.9
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 2.0e-06 58.2 93 40.9
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 3.4e-06 57.4 79 46.8
BolC4t25844H Brassica oleracea HOM05D004999 ORTHO05D021597 1.0e-05 55.8 52 51.9


User provided reference genes

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