Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 3.7e-94 348.2 177 100.0
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 3.0e-88 328.6 177 93.8
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.2e-76 290.0 177 81.9
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.2e-76 290.0 177 86.4
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.3e-75 286.6 177 80.8
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.7e-75 286.2 177 84.7
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 3.9e-75 285.0 177 80.8
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 8.6e-75 283.9 177 80.8
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 1.9e-74 282.7 177 80.2
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 2.5e-74 282.3 177 83.1
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 3.3e-74 282.0 177 83.1
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 5.6e-74 281.2 177 80.2
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 1.2e-73 280.0 177 81.4
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.2e-73 280.0 166 84.9
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 3.6e-73 278.5 177 81.9
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 3.6e-73 278.5 177 80.2
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 6.1e-73 277.7 178 80.3
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 1.0e-72 276.9 177 82.5
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 1.0e-72 276.9 183 79.8
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 3.1e-72 275.4 177 81.9
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 4.0e-72 275.0 169 84.0
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 4.0e-72 275.0 169 84.0
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 6.8e-72 274.2 173 82.1
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.2e-71 273.5 169 83.4
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 1.2e-71 273.5 171 82.5
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.5e-71 273.1 177 80.2
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 2.6e-71 272.3 168 83.3
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 4.4e-71 271.6 177 78.0
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 7.5e-71 270.8 168 82.1
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 7.5e-71 270.8 179 78.2
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.7e-70 269.6 177 79.7
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 3.7e-70 268.5 182 78.0
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 4.9e-70 268.1 177 78.5
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 6.4e-70 267.7 172 80.2
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.1e-69 266.9 178 77.5
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 1.1e-69 266.9 179 76.5
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 1.1e-69 266.9 173 79.8
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 1.4e-69 266.5 166 82.5
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 1.4e-69 266.5 178 75.8
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 1.9e-69 266.2 168 80.4
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 1.9e-69 266.2 177 77.4
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 2.4e-69 265.8 177 76.3
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 2.4e-69 265.8 171 78.4
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 2.4e-69 265.8 171 80.1
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 3.2e-69 265.4 166 80.7
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 3.2e-69 265.4 177 79.1
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 7.0e-69 264.2 178 75.8
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 2.0e-68 262.7 180 75.6
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 2.0e-68 262.7 170 78.2
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 2.7e-68 262.3 179 75.4
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 4.6e-68 261.5 165 78.8
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 4.6e-68 261.5 178 77.5
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 6.0e-68 261.2 178 77.0
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 6.0e-68 261.2 168 79.2
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.0e-67 260.4 171 78.9
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.3e-67 260.0 153 85.6
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.3e-67 260.0 173 78.6
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 1.7e-67 259.6 168 79.2
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.3e-67 259.2 176 79.5
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 3.0e-67 258.8 177 76.3
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 3.0e-67 258.8 178 77.0
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 3.9e-67 258.5 169 78.1
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 6.6e-67 257.7 177 75.7
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 8.6e-67 257.3 173 76.3
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 8.6e-67 257.3 171 76.0
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 1.1e-66 256.9 169 81.1
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.1e-66 256.9 173 77.5
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.5e-66 256.5 168 76.2
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 3.3e-66 255.4 179 76.0
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 3.3e-66 255.4 169 77.5
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 4.3e-66 255.0 179 76.5
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 4.3e-66 255.0 177 74.6
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 7.3e-66 254.2 177 73.4
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 7.3e-66 254.2 177 73.4
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 7.3e-66 254.2 169 79.3
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 9.5e-66 253.8 177 73.4
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 9.5e-66 253.8 157 81.5
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 1.2e-65 253.4 167 79.6
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 2.8e-65 252.3 177 72.9
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 2.8e-65 252.3 172 76.2
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 6.2e-65 251.1 142 88.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 6.2e-65 251.1 206 66.0
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 8.0e-65 250.8 168 78.0
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 4.0e-64 248.4 143 86.0
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 6.8e-64 247.7 138 90.6
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 6.8e-64 247.7 138 90.6
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 8.9e-64 247.3 167 74.9
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 1.2e-63 246.9 169 78.1
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.2e-63 246.9 212 64.6
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 2.6e-63 245.7 139 89.2
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 2.6e-63 245.7 139 87.8
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 4.4e-63 245.0 176 73.9
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 5.8e-63 244.6 169 74.6
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 9.8e-63 243.8 141 85.1
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.3e-62 243.4 177 74.0
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 8.3e-62 240.7 167 76.6
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 8.3e-62 240.7 149 80.5
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 8.3e-62 240.7 141 84.4
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 1.1e-61 240.4 141 85.1
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 1.1e-61 240.4 139 86.3
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 1.1e-61 240.4 177 72.3
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 1.4e-61 240.0 169 74.0
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 1.4e-61 240.0 141 83.7
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 5.4e-61 238.0 139 87.1
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.6e-60 236.5 163 77.9
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 2.3e-59 232.6 169 73.4
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 8.6e-59 230.7 170 68.8
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 1.2e-57 226.9 166 69.3
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 2.8e-57 225.7 165 73.3
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.8e-56 223.0 160 73.8
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 1.5e-55 219.9 174 65.5
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 2.0e-55 219.5 138 78.3
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 7.6e-55 217.6 167 68.9
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 6.4e-54 214.5 157 71.3
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 2.7e-52 209.1 168 64.3
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 6.0e-52 208.0 152 72.4
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 6.6e-51 204.5 140 73.6
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 8.6e-51 204.1 138 73.9
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.3e-46 190.3 170 65.9
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 3.8e-46 188.7 138 65.9
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 2.4e-40 169.5 140 62.1
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 2.9e-38 162.5 134 64.9
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 4.9e-38 161.8 136 64.0
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.6e-36 156.8 145 57.2
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 6.6e-35 151.4 123 62.6
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.1e-34 150.6 123 62.6
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 4.3e-34 148.7 123 63.4
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 9.6e-34 147.5 82 84.1
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 6.9e-32 141.4 103 68.9
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 1.5e-31 140.2 112 66.1
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 1.7e-30 136.7 137 53.3
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 8.4e-30 134.4 157 53.5
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 9.3e-29 131.0 101 75.2
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 1.6e-28 130.2 170 41.8
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 1.0e-27 127.5 97 72.2
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 3.0e-27 125.9 80 81.2
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 1.1e-26 124.0 96 65.6
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.5e-26 123.6 101 67.3
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.6e-25 120.2 116 60.3
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 2.1e-25 119.8 88 69.3
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 2.1e-25 119.8 95 67.4
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 4.8e-25 118.6 89 70.8
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.1e-24 117.5 97 68.0
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 4.0e-24 115.5 82 69.5
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 2.0e-23 113.2 85 68.2
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 1.7e-22 110.2 86 67.4
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 3.8e-22 109.0 90 72.2
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 1.6e-20 103.6 70 74.3
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 3.5e-20 102.4 126 52.4
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 1.3e-19 100.5 69 71.0
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.1e-19 98.6 59 83.1
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 4.3e-18 95.5 59 79.7
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.7e-18 95.1 59 83.1
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 1.8e-16 90.1 56 71.4
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 3.8e-14 82.4 83 57.8
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.4e-13 80.5 63 68.3
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 1.6e-12 77.0 121 42.1
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 6.1e-12 75.1 45 80.0
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 1.3e-11 73.9 109 45.9
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 1.9e-10 70.1 57 66.7
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.6e-09 67.0 52 69.2
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.6e-09 67.0 52 69.2
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.7e-09 65.9 57 63.2
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 3.7e-09 65.9 44 77.3
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 1.2e-07 60.8 37 78.4
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.0e-06 57.8 47 63.8
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 1.7e-06 57.0 30 86.7
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 3.8e-06 55.8 67 50.7
Eucgr.L03680 Eucalyptus grandis HOM05D004245 ORTHO05D004783 8.5e-06 54.7 106 39.6


User provided reference genes

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