Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1711.4 858 100.0
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1459.1 858 85.2
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1446.0 858 85.0
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1443.7 852 84.5
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1442.2 858 84.8
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1439.9 860 85.0
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1437.6 860 84.7
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1433.3 856 83.6
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1431.8 860 84.3
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1429.5 857 83.4
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1426.4 852 84.3
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1424.8 860 84.1
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1424.5 879 81.8
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1424.1 854 83.7
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1422.9 852 84.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1421.0 819 87.1
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1419.8 859 83.4
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1417.1 859 83.2
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1416.4 851 83.3
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1415.6 851 84.0
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1414.1 858 83.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1414.1 856 82.9
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1412.5 859 83.2
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1410.2 860 83.3
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1409.8 857 83.0
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1408.7 828 84.8
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1407.9 859 82.9
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1407.1 859 83.2
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1406.7 859 82.9
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1404.0 857 83.0
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1403.7 852 83.7
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1402.1 837 84.6
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1401.3 854 82.8
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1401.0 823 85.2
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1399.4 825 84.7
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1399.0 857 83.3
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1398.6 871 81.6
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1398.3 837 84.3
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1398.3 837 84.3
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1394.8 853 83.4
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1393.3 860 81.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1390.6 848 82.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1389.8 811 85.7
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1388.6 858 82.2
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1387.5 860 81.5
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1386.3 840 82.5
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1384.4 858 82.3
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1384.4 902 78.9
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1384.0 840 82.6
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1383.6 845 82.5
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 845 82.5
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 832 83.4
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1380.9 854 82.4
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1375.9 856 81.3
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1375.9 837 83.3
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1374.8 858 81.5
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1372.8 837 83.3
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1372.1 840 83.5
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 888 76.4
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1370.9 853 82.1
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1369.8 846 81.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1365.5 806 84.5
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1363.6 858 80.9
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1362.1 841 82.4
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1361.3 849 80.8
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1360.9 838 82.5
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1358.6 859 80.3
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1355.9 845 81.3
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1354.0 842 82.1
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1350.9 829 81.1
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1350.1 827 83.6
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 842 80.4
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1340.1 834 82.3
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1339.7 853 80.0
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1339.7 848 81.0
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 863 78.6
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 858 80.8
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 838 80.4
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 882 78.0
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1334.7 833 80.6
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1332.8 846 78.8
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1327.8 820 81.1
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 820 83.0
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 896 77.2
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 831 79.9
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 785 84.7
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 848 78.9
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 844 80.2
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1320.1 819 80.5
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1319.7 817 80.4
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 854 78.3
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 849 80.0
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 849 80.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 842 78.7
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 849 80.0
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 850 78.8
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 833 79.5
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 898 74.2
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1307.7 832 79.7
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1307.7 855 78.2
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1305.8 833 79.4
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 820 80.4
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 842 78.7
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1302.7 845 78.3
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 834 79.6
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 826 78.8
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 858 77.9
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 858 77.9
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 858 77.9
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 858 77.9
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 848 77.2
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1292.7 819 79.7
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 834 79.5
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 854 78.5
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 854 78.3
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 884 75.2
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 834 77.9
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 831 78.1
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 822 78.3
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 849 72.9
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 844 76.9
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 777 83.4
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 820 78.5
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1260.0 819 79.5
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1257.7 857 77.0
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1257.7 813 77.6
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 815 78.9
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 842 77.1
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 834 75.2
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 846 75.3
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 845 75.6
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1229.2 761 81.2
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1228.8 912 70.9
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 709 86.3
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1221.1 836 76.8
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1201.8 826 72.5
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1196.8 824 73.4
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1160.2 760 76.2
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1154.0 819 72.0
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1142.1 825 71.2
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 737 80.1
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1098.6 839 70.6
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 9.3e-300 1033.5 602 82.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-291 1006.5 849 65.5
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 9.0e-279 963.8 646 70.4
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.7e-269 932.9 520 86.7
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.9e-269 932.2 549 86.5
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.8e-266 922.9 596 75.8
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-201 707.6 712 56.7
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.2e-152 543.9 462 59.7
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.0e-152 542.7 333 79.9
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.8e-146 524.2 358 80.2
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.2e-110 405.2 318 71.4
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 7.0e-106 389.4 281 69.0
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-101 375.6 401 54.6
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.7e-94 350.1 581 46.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.0e-60 238.4 146 79.5
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.6e-60 238.0 156 77.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 2.4e-45 188.3 163 58.9
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.3e-39 167.9 129 64.3
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 1.8e-37 162.2 503 29.2
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.0e-31 142.1 462 27.7
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 7.4e-31 140.2 76 85.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.8e-30 137.5 458 27.7
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 6.5e-27 127.1 63 93.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 8.5e-27 126.7 429 28.2
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.2e-25 122.9 74 75.7
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.6e-25 122.5 472 27.1
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.0e-24 119.8 96 65.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-16 93.2 266 28.2
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-16 92.4 220 31.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 9.7e-15 86.7 83 54.2
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.7e-14 85.9 207 31.9
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 3.6e-09 68.2 138 31.9
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-08 63.5 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.6e-07 62.0 38 78.9


User provided reference genes

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