Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 4.6e-129 464.5 229 100.0
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 1.4e-125 453.0 229 96.5
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 3.1e-125 451.8 229 95.6
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 9.0e-125 450.3 229 96.1
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.0e-124 449.1 229 95.2
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.6e-124 448.7 229 96.1
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 2.6e-124 448.7 229 95.6
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 4.4e-124 448.0 229 95.6
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 95.6
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 95.2
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 95.2
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 7.6e-124 447.2 229 94.8
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 1.3e-123 446.4 229 94.8
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.7e-123 446.0 226 95.6
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.7e-123 446.0 226 95.6
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 93.9
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 94.3
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 2.2e-123 445.7 229 93.9
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 2.9e-123 445.3 229 93.9
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 94.8
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 93.9
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 93.9
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 94.3
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 94.8
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.4
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 4.9e-123 444.5 229 93.9
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 6.4e-123 444.1 227 93.4
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 6.4e-123 444.1 227 93.4
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 6.4e-123 444.1 226 95.1
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 93.4
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 93.4
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 1.1e-122 443.4 227 94.7
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 94.3
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 1.1e-122 443.4 229 93.9
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 92.6
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.9
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 94.8
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 1.4e-122 443.0 229 93.9
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.9e-122 442.6 229 93.0
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 93.9
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 93.4
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 93.4
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 5.4e-122 441.0 227 94.3
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.2e-121 439.9 229 92.1
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 93.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 92.1
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 92.6
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 93.9
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 3.5e-121 438.3 227 91.6
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 93.4
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 93.4
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 93.0
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.0e-120 436.8 229 92.6
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 2.3e-120 435.6 229 91.3
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 6.6e-120 434.1 229 91.3
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.1e-119 433.3 229 91.3
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.1e-119 433.3 229 91.7
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 1.6e-118 429.5 229 90.8
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 1.6e-118 429.5 220 93.2
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 2.8e-118 428.7 227 91.2
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.4e-117 426.4 228 90.4
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 1.8e-117 426.0 227 89.0
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 1.8e-117 426.0 231 90.0
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.8e-117 426.0 229 90.0
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 2.4e-117 425.6 229 89.1
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 4.0e-117 424.9 231 89.6
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 6.9e-117 424.1 229 89.5
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.0e-116 422.5 229 90.8
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.6e-116 422.2 229 87.3
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.6e-116 422.2 229 90.4
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 9.9e-116 420.2 227 88.1
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 3.8e-115 418.3 229 86.9
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 89.0
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 89.0
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 89.0
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 89.0
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 88.5
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 8.4e-115 417.2 227 89.0
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 1.1e-114 416.8 229 86.5
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 1.9e-114 416.0 227 88.5
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 2.1e-113 412.5 227 87.2
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 2.7e-113 412.1 229 86.5
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 2.7e-113 412.1 226 86.3
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 90.0
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 7.9e-113 410.6 226 86.3
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.0e-112 410.2 227 87.2
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 1.8e-112 409.5 236 85.6
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 2.3e-112 409.1 227 86.3
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 86.3
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 3.0e-112 408.7 227 86.3
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 3.9e-112 408.3 227 86.3
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 8.7e-112 407.1 228 85.1
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 1.1e-111 406.8 227 85.9
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 4.3e-111 404.8 227 85.9
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 2.1e-110 402.5 254 79.5
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.1e-109 400.2 228 84.6
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.4e-109 399.8 227 83.7
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 5.8e-108 394.4 203 94.6
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 7.6e-108 394.0 204 93.6
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 4.9e-107 391.3 202 93.1
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 5.5e-106 387.9 229 84.3
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 1.1e-103 380.2 227 78.4
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.5e-103 379.8 201 92.0
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 9.6e-103 377.1 229 79.0
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 2.4e-101 372.5 191 96.3
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 2.4e-101 372.5 210 83.8
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 6.9e-101 370.9 190 96.3
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 6.9e-101 370.9 229 76.0
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 6.9e-101 370.9 229 76.0
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.2e-100 370.2 233 81.1
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.6e-100 369.0 200 89.5
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 4.5e-100 368.2 190 94.2
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 5.8e-100 367.9 227 74.4
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.3e-99 366.7 250 75.6
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.1e-98 363.6 197 89.8
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 3.5e-97 358.6 191 91.1
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 6.0e-97 357.8 229 78.6
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 1.8e-96 356.3 187 93.6
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 8.7e-96 354.0 185 94.6
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 1.5e-95 353.2 227 75.8
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 1.2e-92 343.6 226 70.8
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 5.0e-91 338.2 185 87.0
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 6.5e-91 337.8 229 73.8
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 3.1e-85 318.9 162 95.7
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 2.2e-83 312.8 164 92.7
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 2.7e-81 305.8 355 49.6
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.9e-76 288.1 160 86.2
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.1e-69 265.4 160 76.9
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.5e-60 235.7 122 92.6
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 1.6e-57 226.9 154 69.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.1e-57 226.5 131 80.2
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.6e-36 157.1 140 58.6
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.0e-28 128.6 69 88.4
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 4.4e-23 112.5 62 79.0
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 6.0e-20 102.1 124 50.8
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 5.1e-19 99.0 152 42.1
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.0e-15 87.0 81 55.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.0e-15 87.0 45 86.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-13 80.5 52 69.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.1e-12 77.0 79 50.6
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 3.0e-11 73.2 49 71.4
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 3.3e-10 69.7 82 52.4
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 5.8e-07 58.9 26 100.0


User provided reference genes

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