Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 2.5e-57 225.3 123 100.0
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 3.2e-36 155.2 127 70.1
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.2e-36 155.2 125 70.4
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.6e-35 152.9 127 66.9
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 6.0e-35 151.0 127 68.5
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.8e-34 149.4 126 65.9
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 2.3e-34 149.1 127 66.9
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.0e-34 148.7 123 67.5
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.0e-34 148.7 123 67.5
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 5.1e-34 147.9 125 69.6
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 5.1e-34 147.9 128 65.6
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.1e-33 146.7 127 66.9
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.1e-33 146.7 125 65.6
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.5e-33 146.4 126 68.3
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.5e-33 145.6 127 67.7
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 3.3e-33 145.2 126 65.1
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.3e-33 145.2 130 69.2
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 7.4e-33 144.1 126 64.3
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 9.6e-33 143.7 125 67.2
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 1.3e-32 143.3 124 65.3
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.6e-32 142.9 126 67.5
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.6e-32 142.9 127 64.6
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 2.1e-32 142.5 127 65.4
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.1e-32 142.5 127 66.1
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.8e-32 142.1 126 63.5
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.7e-32 141.7 125 63.2
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.7e-32 141.7 124 65.3
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 3.7e-32 141.7 121 66.1
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 4.8e-32 141.4 126 65.1
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 4.8e-32 141.4 127 64.6
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 4.8e-32 141.4 126 63.5
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.1e-31 140.2 129 65.1
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.1e-31 140.2 128 65.6
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.1e-31 140.2 121 64.5
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.8e-31 139.4 125 66.4
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 2.4e-31 139.0 128 66.4
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 3.1e-31 138.7 126 69.0
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 3.1e-31 138.7 128 63.3
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 3.1e-31 138.7 124 62.1
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.0e-31 138.3 128 64.8
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 5.3e-31 137.9 124 66.1
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 5.3e-31 137.9 128 64.8
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 6.9e-31 137.5 124 65.3
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 6.9e-31 137.5 122 66.4
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 6.9e-31 137.5 124 62.9
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 6.9e-31 137.5 127 63.8
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.9e-31 137.5 127 63.8
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.9e-31 137.5 126 66.7
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 9.0e-31 137.1 124 65.3
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 9.0e-31 137.1 126 63.5
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 9.0e-31 137.1 124 66.1
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 9.0e-31 137.1 128 67.2
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 9.0e-31 137.1 126 61.9
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 67.2
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 67.2
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 67.2
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 126 63.5
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.2e-30 136.7 124 65.3
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 127 63.8
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 61.6
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 1.5e-30 136.3 124 65.3
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-30 136.0 125 62.4
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-30 136.0 126 65.1
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-30 136.0 124 64.5
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 2.6e-30 135.6 126 62.7
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 2.6e-30 135.6 126 62.7
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.6e-30 135.6 128 63.3
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 2.6e-30 135.6 127 63.0
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 2.6e-30 135.6 127 61.4
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 3.4e-30 135.2 125 66.4
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 3.4e-30 135.2 125 66.4
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.4e-30 135.2 103 71.8
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 3.4e-30 135.2 120 64.2
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.5e-30 134.8 126 63.5
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 5.8e-30 134.4 126 64.3
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-30 134.4 126 64.3
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 5.8e-30 134.4 126 60.3
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 7.6e-30 134.0 125 63.2
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 7.6e-30 134.0 124 62.1
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.7e-29 132.9 123 63.4
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-29 132.9 126 63.5
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 2.2e-29 132.5 130 63.1
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 2.2e-29 132.5 122 60.7
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.9e-29 132.1 122 61.5
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 2.9e-29 132.1 120 66.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 2.9e-29 132.1 128 64.1
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 2.9e-29 132.1 126 58.7
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 3.8e-29 131.7 125 61.6
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.8e-29 131.7 129 58.9
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 4.9e-29 131.3 125 61.6
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.5e-29 131.0 126 63.5
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.1e-28 130.2 121 64.5
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.1e-28 130.2 126 61.1
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.4e-28 129.8 94 74.5
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.4e-28 129.8 127 62.2
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.4e-28 129.8 125 63.2
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.4e-28 129.8 114 61.4
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 125 60.8
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 1.9e-28 129.4 123 58.5
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.5e-28 129.0 124 61.3
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.5e-28 129.0 130 60.0
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 3.2e-28 128.6 123 57.7
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 3.2e-28 128.6 123 57.7
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.2e-28 128.3 125 60.8
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.2e-28 128.3 125 60.8
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 5.5e-28 127.9 126 64.3
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 9.3e-28 127.1 131 61.1
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 9.3e-28 127.1 121 60.3
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.6e-27 126.3 126 62.7
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-27 126.3 125 60.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-27 125.9 125 60.0
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 3.5e-27 125.2 127 59.1
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 4.6e-27 124.8 125 62.4
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.6e-27 124.8 121 59.5
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 6.0e-27 124.4 129 61.2
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 7.9e-27 124.0 124 56.5
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.0e-26 123.6 125 57.6
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.0e-26 123.6 126 56.3
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.3e-26 123.2 128 59.4
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 2.3e-26 122.5 120 59.2
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 3.0e-26 122.1 102 61.8
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 3.9e-26 121.7 123 60.2
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 3.9e-26 121.7 124 58.1
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 3.9e-26 121.7 125 60.8
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.9e-26 121.7 124 57.3
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 6.7e-26 120.9 120 58.3
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.1e-25 120.2 117 60.7
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.5e-25 119.8 122 56.6
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.3e-25 118.2 97 67.0
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 4.3e-25 118.2 124 56.5
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 4.3e-25 118.2 124 55.6
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 5.7e-25 117.9 122 55.7
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 3.7e-24 115.2 124 59.7
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 4.8e-24 114.8 123 57.7
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 8.2e-24 114.0 101 62.4
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 2.4e-23 112.5 126 54.8
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.4e-23 112.5 121 55.4
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 4.1e-23 111.7 114 54.4
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 6.9e-23 110.9 121 56.2
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 9.0e-23 110.5 124 55.6
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.4e-22 108.6 110 56.4
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.9e-22 107.8 121 57.0
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 2.9e-21 105.5 126 51.6
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 6.5e-21 104.4 132 53.8
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.5e-20 101.3 105 57.1
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.6e-19 99.8 124 52.4
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.6e-19 98.6 124 49.2
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.9e-18 95.1 121 47.9
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 5.7e-17 91.3 124 50.0
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 7.4e-17 90.9 114 49.1
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.8e-16 89.0 129 51.9
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.7e-16 88.6 122 42.6
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 3.7e-16 88.6 122 45.9
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 4.8e-16 88.2 88 53.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 3.4e-14 82.0 55 81.8
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.7e-13 79.7 123 41.5
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 1.4e-12 76.6 56 76.8
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.9e-12 76.3 73 60.3
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.2e-11 73.6 128 43.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 6.1e-11 71.2 74 51.4
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 6.7e-10 67.8 75 52.0
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 4.8e-08 61.6 109 45.9
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 2.6e-06 55.8 111 41.4


User provided reference genes

Program Settings