Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 9.3e-144 513.5 247 100.0
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.6e-98 363.2 257 69.6
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 5.9e-98 361.3 257 70.8
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.3e-97 360.1 258 69.8
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 3.8e-97 358.6 255 69.8
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 6.5e-97 357.8 253 68.0
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 8.5e-97 357.5 253 68.0
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.1e-96 357.1 257 68.9
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.5e-96 355.9 253 66.4
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.2e-96 354.4 257 67.7
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 7.2e-96 354.4 252 71.0
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.4e-96 354.0 257 68.5
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.0e-94 350.5 255 65.5
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 4.0e-94 348.6 255 67.8
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.0e-94 348.6 250 68.0
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 5.2e-94 348.2 233 72.5
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 5.2e-94 348.2 252 67.9
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 6.8e-94 347.8 219 77.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 2.6e-93 345.9 244 70.9
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 4.4e-93 345.1 257 66.5
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-92 343.6 257 67.3
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.7e-92 343.2 254 66.5
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.7e-92 343.2 246 69.5
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.2e-92 342.8 252 66.3
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.8e-92 341.7 257 67.7
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 6.3e-92 341.3 257 69.3
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.3e-92 340.9 257 66.5
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-91 340.5 253 66.8
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 5.4e-91 338.2 257 68.5
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.0e-91 337.8 253 68.4
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.2e-90 337.0 253 63.6
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.6e-90 336.7 252 67.9
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.6e-90 336.7 252 67.9
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.7e-90 335.9 258 62.4
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.5e-90 335.5 253 66.0
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 7.7e-90 334.3 256 66.0
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.7e-89 333.2 261 66.7
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.7e-89 333.2 185 82.7
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.2e-89 332.8 241 66.8
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 5.0e-89 331.6 250 66.4
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 6.5e-89 331.3 253 64.0
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 8.5e-89 330.9 230 69.6
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 3.2e-88 328.9 246 65.0
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 3.2e-88 328.9 218 71.6
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 9.4e-88 327.4 247 66.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.1e-87 326.2 246 65.9
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 8.0e-87 324.3 258 62.0
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.0e-86 323.9 252 63.1
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-86 323.6 258 62.8
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.3e-86 322.8 255 62.7
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 4.0e-86 322.0 253 64.4
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 6.8e-86 321.2 230 68.7
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 6.8e-86 321.2 251 60.6
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.2e-85 320.5 245 64.9
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.2e-85 320.5 246 62.6
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-85 320.1 249 65.9
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.0e-85 319.7 252 61.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 2.6e-85 319.3 253 61.3
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 2.6e-85 319.3 257 61.5
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 4.4e-85 318.5 259 61.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 4.4e-85 318.5 253 60.5
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 4.4e-85 318.5 256 61.3
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.7e-85 318.2 249 65.5
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 5.7e-85 318.2 284 56.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 2.2e-84 316.2 251 62.5
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 2.8e-84 315.8 259 60.2
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 2.8e-84 315.8 254 61.0
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 3.7e-84 315.5 251 60.6
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.7e-84 315.5 252 60.3
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 3.7e-84 315.5 255 60.8
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 4.9e-84 315.1 257 59.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 4.9e-84 315.1 258 62.8
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 6.3e-84 314.7 251 61.0
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 6.3e-84 314.7 255 62.7
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 8.3e-84 314.3 251 61.0
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 8.3e-84 314.3 256 60.5
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.1e-83 313.9 257 61.1
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.4e-83 313.5 257 61.9
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 3.1e-83 312.4 254 61.4
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 3.1e-83 312.4 254 61.0
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 5.4e-83 311.6 250 62.4
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 9.1e-83 310.8 257 61.1
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.0e-82 309.7 258 60.9
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.7e-82 309.3 257 60.7
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 3.5e-82 308.9 249 60.6
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.0e-81 307.4 257 59.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.7e-81 306.6 228 63.2
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.3e-81 306.2 257 59.9
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.3e-81 306.2 178 76.4
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 5.0e-81 305.1 255 59.2
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 6.6e-81 304.7 255 60.4
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-80 303.5 247 59.5
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 9.5e-80 300.8 178 77.0
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.2e-79 300.4 250 61.6
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 8.0e-79 297.7 166 80.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.4e-78 297.0 247 58.7
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.4e-78 297.0 172 77.9
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.4e-78 297.0 172 77.9
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.3e-78 296.2 210 66.2
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.3e-78 296.2 220 64.1
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.0e-78 295.4 255 58.8
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.5e-77 293.5 244 59.8
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.0e-77 293.1 250 61.2
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 5.7e-77 291.6 243 58.0
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 9.8e-77 290.8 248 59.7
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 9.8e-77 290.8 250 60.8
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.3e-76 290.4 176 75.6
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.3e-76 290.4 176 75.6
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 2.9e-76 289.3 243 58.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 2.9e-76 289.3 189 73.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.8e-75 286.6 256 55.5
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.4e-75 286.2 257 59.1
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.2e-75 285.8 253 60.1
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 9.2e-75 284.3 177 69.5
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.6e-74 283.5 251 57.4
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.0e-73 280.8 246 58.1
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.3e-73 280.4 212 66.0
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.9e-73 278.9 150 86.7
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 5.0e-73 278.5 213 65.7
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 6.6e-73 278.1 248 57.3
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 8.6e-73 277.7 175 72.0
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.8e-70 270.0 212 60.8
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 1.2e-69 267.3 247 55.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 3.4e-69 265.8 163 77.9
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.2e-68 263.1 232 59.9
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.2e-68 263.1 171 69.6
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.4e-67 259.6 248 54.8
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.6e-66 255.4 245 55.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 5.0e-65 251.9 214 57.9
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-62 244.2 259 53.3
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.0e-62 242.3 257 53.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 4.0e-62 242.3 146 76.0
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 5.8e-61 238.4 211 55.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 4.9e-60 235.3 152 75.7
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 4.6e-58 228.8 166 62.0
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.3e-57 226.5 164 63.4
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 8.6e-57 224.6 164 62.2
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 4.7e-55 218.8 194 52.1
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 8.1e-55 218.0 258 48.1
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.8e-54 216.9 144 68.1
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.3e-54 216.5 166 57.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 8.9e-54 214.5 171 57.9
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 8.4e-52 208.0 111 83.8
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 9.6e-48 194.5 255 44.7
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 7.3e-40 168.3 143 60.1
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-34 150.6 84 82.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 4.6e-34 149.1 99 69.7
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.9e-34 148.3 210 44.8
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.3e-30 135.6 93 67.7
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.8e-29 132.1 85 67.1
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 2.2e-28 130.2 213 32.9
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.2e-27 126.3 99 60.6
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 4.6e-26 122.5 63 87.3
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.7e-25 118.6 73 74.0
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.6e-23 114.0 65 80.0
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.1e-22 111.3 78 67.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.4e-22 110.2 141 39.0
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.8e-21 105.5 67 71.6
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 4.6e-18 95.9 86 54.7
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.9e-16 90.5 100 51.0
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 2.4e-14 83.6 46 80.4
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.1e-14 82.8 51 72.5
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.5e-13 79.3 39 84.6
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.8e-12 76.3 51 68.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.8e-12 76.3 51 68.6
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.0e-09 66.6 43 72.1
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 2.5e-08 63.5 38 76.3
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 8.2e-07 58.5 107 38.3


User provided reference genes

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