Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 8.9e-113 410.2 199 100.0
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 4.5e-96 354.8 201 84.1
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 7.1e-94 347.4 201 82.6
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 2.7e-93 345.5 199 82.9
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 7.9e-93 344.0 201 82.1
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.0e-92 342.0 201 80.6
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.0e-92 342.0 202 81.2
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.0e-92 342.0 202 81.2
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.7e-92 340.5 202 81.2
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.4e-89 333.2 201 79.1
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 3.1e-89 332.0 201 81.1
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 5.3e-89 331.3 201 82.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 1.5e-88 329.7 200 78.0
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 2.6e-88 328.9 201 76.6
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.4e-88 328.6 205 78.0
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.4e-88 328.6 205 78.0
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 4.5e-88 328.2 205 77.6
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 9.9e-88 327.0 201 78.6
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.3e-87 326.6 207 79.7
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 3.8e-87 325.1 200 79.0
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 8.4e-87 323.9 205 77.6
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.1e-86 323.6 200 75.0
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.9e-86 322.8 199 77.4
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 4.2e-86 321.6 199 78.4
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 7.1e-86 320.9 204 74.0
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.1e-86 320.9 198 78.8
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 9.3e-86 320.5 200 75.0
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.2e-85 320.1 198 77.3
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 2.1e-85 319.3 201 77.6
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 4.6e-85 318.2 201 74.1
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.0e-84 317.0 209 71.3
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.3e-84 315.8 210 71.0
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 5.1e-84 314.7 189 82.5
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.1e-83 313.5 197 74.1
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 3.3e-83 312.0 196 76.5
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 1.3e-82 310.1 197 73.6
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.3e-82 310.1 199 75.9
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.3e-82 310.1 193 75.6
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 2.1e-82 309.3 201 75.1
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 3.7e-82 308.5 197 75.1
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 3.7e-82 308.5 197 75.1
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.1e-81 307.0 198 72.7
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.8e-81 306.2 200 72.0
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.8e-81 306.2 197 73.1
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 4.0e-81 305.1 198 71.2
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.2e-80 303.5 201 74.1
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.2e-80 303.5 198 74.2
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.0e-80 302.8 201 73.6
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.0e-80 302.8 201 73.6
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.0e-80 302.8 195 74.4
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 2.6e-80 302.4 197 72.6
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.4e-80 302.0 202 72.3
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 3.4e-80 302.0 198 74.7
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.0e-79 300.4 201 72.1
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.7e-79 299.7 206 69.9
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.2e-79 299.3 201 74.1
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.2e-79 299.3 198 74.2
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.9e-79 298.9 197 71.1
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 3.8e-79 298.5 192 74.0
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.9e-79 298.1 193 73.6
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.2e-78 295.0 201 73.1
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 5.5e-78 294.7 197 69.0
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 7.1e-78 294.3 199 70.9
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 1.6e-77 293.1 197 68.5
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.1e-77 292.7 202 70.3
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.7e-77 292.4 196 70.9
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 3.5e-77 292.0 202 70.3
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.3e-76 290.0 201 68.7
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.3e-76 290.0 201 70.6
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.8e-76 289.7 192 71.9
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 5.1e-76 288.1 212 65.1
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.5e-75 286.6 197 71.1
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 4.8e-74 281.6 197 69.0
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 4.8e-74 281.6 202 66.8
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.1e-73 280.4 203 66.0
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 9.0e-73 277.3 203 65.5
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.5e-72 276.6 199 66.3
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 3.4e-72 275.4 200 69.0
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.0e-71 273.9 200 66.0
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.2e-71 272.7 200 66.5
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.4e-70 270.0 201 68.2
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 4.2e-70 268.5 193 68.9
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 7.2e-70 267.7 201 67.7
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 7.2e-70 267.7 199 65.3
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.0e-68 263.8 201 63.2
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.3e-68 263.5 166 74.1
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.3e-68 263.5 193 68.4
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 2.3e-68 262.7 201 66.2
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 3.0e-68 262.3 193 67.4
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 3.0e-68 262.3 193 67.9
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.5e-67 260.0 190 66.8
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 3.3e-67 258.8 200 63.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 5.7e-67 258.1 201 60.7
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 7.4e-67 257.7 201 60.2
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 7.4e-67 257.7 196 64.8
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.3e-66 256.9 202 59.4
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.6e-66 256.5 199 63.8
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 3.7e-66 255.4 196 66.3
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.5e-64 250.0 194 62.9
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.6e-64 249.2 203 59.6
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.0e-63 247.3 204 60.8
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.0e-63 247.3 147 79.6
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.4e-62 243.4 195 61.5
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 3.2e-62 242.3 198 61.1
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 3.2e-62 242.3 207 57.0
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.2e-62 241.9 181 66.3
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 4.2e-62 241.9 202 60.9
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 4.6e-61 238.4 215 54.9
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.1e-59 233.8 191 59.2
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.1e-59 233.8 192 59.4
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 3.7e-58 228.8 155 67.7
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 8.2e-58 227.6 211 53.6
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 5.3e-57 224.9 189 57.1
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.0e-56 223.0 193 61.7
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 5.9e-56 221.5 207 53.1
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 2.9e-55 219.2 209 53.6
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 6.5e-55 218.0 166 64.5
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 6.5e-55 218.0 166 64.5
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 7.2e-54 214.5 208 52.4
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 4.7e-53 211.8 217 49.8
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 4.7e-53 211.8 217 49.8
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.8e-52 209.9 196 53.6
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 3.0e-52 209.1 209 51.7
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 6.7e-52 208.0 123 78.0
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.4e-49 200.3 197 51.8
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.8e-49 199.9 187 57.8
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.8e-49 199.9 187 57.8
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.0e-48 196.4 195 51.3
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.6e-48 196.1 198 50.0
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 5.0e-47 191.8 173 53.8
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.9e-46 189.9 136 64.7
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.5e-46 188.3 172 53.5
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 6.1e-45 184.9 175 51.4
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.4e-44 183.7 175 51.4
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 2.8e-42 176.0 109 70.6
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 7.0e-41 171.4 163 53.4
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 2.0e-40 169.9 189 48.1
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.3e-39 167.2 149 55.7
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.2e-39 166.4 202 43.6
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.5e-39 164.9 200 46.0
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.5e-39 164.9 199 43.2
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-38 162.9 203 39.9
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.2e-38 162.2 194 43.8
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.2e-37 160.6 161 47.8
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.8e-33 146.7 199 41.2
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.2e-29 134.0 193 40.9
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.9e-24 115.2 215 35.3
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.6e-21 105.9 202 35.1
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.1e-17 94.4 124 42.7
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.4e-09 66.6 110 30.9


User provided reference genes

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