Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 4.4e-127 458.0 236 100.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 5.3e-112 407.9 236 86.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.6e-111 405.6 236 85.6
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 1.7e-110 402.9 236 85.6
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 6.4e-110 401.0 236 84.7
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 6.4e-110 401.0 236 84.7
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 8.4e-110 400.6 236 83.5
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.6e-108 396.4 236 83.5
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 7.8e-108 394.0 236 83.5
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.3e-107 393.3 236 83.9
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 3.9e-107 391.7 236 82.2
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 5.1e-107 391.3 234 84.2
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 2.5e-106 389.0 236 82.2
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 2.5e-106 389.0 236 80.9
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 3.3e-106 388.7 236 81.4
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 3.3e-106 388.7 236 81.4
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 2.1e-105 386.0 236 79.7
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 2.1e-105 386.0 236 79.7
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.8e-105 384.8 236 80.5
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 8.1e-105 384.0 233 80.3
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.4e-104 383.3 236 82.2
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.4e-104 383.3 236 80.5
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.4e-104 382.5 236 80.1
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 9.0e-104 380.6 233 79.8
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.6e-103 379.0 236 80.1
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 3.4e-103 378.6 236 76.7
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 7.6e-103 377.5 237 79.3
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.7e-102 376.3 238 80.7
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.9e-102 375.6 236 79.7
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 2.9e-102 375.6 234 81.6
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.9e-102 375.6 236 79.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 2.9e-102 375.6 236 79.2
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 6.4e-102 374.4 236 79.2
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.4e-102 374.4 236 78.8
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 2.4e-101 372.5 236 78.8
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 9.3e-101 370.5 236 79.2
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.6e-100 369.8 236 77.5
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 2.7e-100 369.0 236 78.4
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 3.5e-100 368.6 227 79.3
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 3.5e-100 368.6 236 78.4
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 7.9e-100 367.5 236 76.7
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.0e-99 367.1 236 76.3
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.3e-99 366.7 234 77.4
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 2.3e-99 365.9 236 76.3
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 5.1e-99 364.8 236 75.4
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 5.1e-99 364.8 236 76.3
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 6.7e-99 364.4 260 70.0
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.3e-98 362.1 231 77.5
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.3e-98 362.1 236 77.5
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 5.6e-98 361.3 236 77.5
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 5.6e-98 361.3 282 67.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 7.4e-98 360.9 236 72.9
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 9.6e-98 360.5 233 76.4
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.6e-97 359.8 236 75.0
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 2.1e-97 359.4 303 63.0
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 2.8e-97 359.0 238 76.9
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 3.7e-97 358.6 236 75.4
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 3.7e-97 358.6 236 75.4
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 6.2e-97 357.8 236 74.2
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 6.2e-97 357.8 238 76.5
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 8.1e-97 357.5 236 75.4
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.8e-96 356.3 236 75.0
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 3.1e-96 355.5 233 75.5
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 3.1e-96 355.5 233 75.5
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 3.1e-96 355.5 233 74.2
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.0e-96 355.1 232 75.9
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.0e-95 352.8 205 87.8
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 2.0e-95 352.8 238 75.6
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.0e-95 352.8 236 73.3
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.6e-95 352.4 272 66.5
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 3.4e-95 352.1 210 84.8
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.7e-94 349.7 236 77.1
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 4.2e-93 345.1 201 85.1
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 4.2e-93 345.1 238 75.2
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 9.3e-93 344.0 236 72.9
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 9.3e-93 344.0 220 79.1
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.6e-92 341.7 204 83.3
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 7.9e-92 340.9 204 82.4
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.9e-90 336.3 236 69.5
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.5e-90 335.9 230 74.3
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 4.3e-90 335.1 233 70.4
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.6e-89 333.2 226 73.9
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 6.2e-89 331.3 240 67.9
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 2.4e-88 329.3 206 79.6
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 4.1e-88 328.6 239 71.5
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 5.3e-88 328.2 241 67.6
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 1.2e-87 327.0 230 73.5
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 1.2e-87 327.0 230 73.5
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 4.5e-87 325.1 205 80.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 3.8e-86 322.0 264 65.9
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.4e-85 320.1 203 77.8
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.2e-85 318.9 235 65.5
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 3.2e-85 318.9 236 65.7
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 5.5e-85 318.2 206 75.7
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.0e-83 313.9 233 69.5
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 2.3e-83 312.8 196 78.1
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 1.6e-81 306.6 187 78.1
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 4.8e-81 305.1 234 64.1
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 4.8e-81 305.1 235 63.0
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 4.8e-81 305.1 235 63.0
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 8.2e-81 304.3 235 63.8
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 8.2e-81 304.3 235 63.4
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.2e-81 304.3 228 69.3
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.1e-80 303.9 235 62.6
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.1e-80 302.0 221 70.1
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.9e-79 298.1 211 71.6
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 2.1e-76 289.7 188 77.7
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.6e-76 288.5 208 72.1
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 7.9e-76 287.7 167 85.0
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.0e-75 287.3 188 75.0
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 5.1e-75 285.0 230 59.1
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 6.7e-75 284.6 166 84.3
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 2.8e-73 279.3 166 84.9
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.4e-72 276.2 230 60.0
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.2e-71 273.9 225 58.7
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.0e-70 270.8 239 56.5
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.9e-69 266.5 227 56.8
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.6e-68 263.5 261 57.5
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 7.9e-68 261.2 233 60.9
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.8e-65 252.7 151 82.1
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 2.4e-64 249.6 221 57.5
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.2e-63 247.3 224 57.6
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 3.8e-62 242.3 147 79.6
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.1e-60 236.5 204 64.2
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.2e-55 220.7 167 62.9
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.7e-52 209.5 126 83.3
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.6e-50 203.0 135 71.9
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 5.7e-50 201.8 135 72.6
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 3.1e-48 196.1 236 49.2
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 4.2e-45 185.7 236 46.2
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 4.9e-41 172.2 111 75.7
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 8.3e-41 171.4 233 46.8
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.6e-39 167.2 104 79.8
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.6e-39 167.2 102 80.4
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 5.9e-39 165.2 106 73.6
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.2e-36 157.5 111 73.9
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 6.8e-35 151.8 262 40.5
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 2.7e-31 139.8 145 49.0
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.0e-30 137.9 212 38.7
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.0e-30 136.3 98 68.4
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.4e-26 122.5 215 33.5
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.3e-22 110.9 74 70.3
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 5.0e-22 109.0 224 32.6
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 5.0e-22 109.0 224 32.6
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 2.5e-21 106.7 106 55.7
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 8.9e-19 98.2 65 75.4
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 5.4e-16 89.0 196 32.1
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 4.6e-15 85.9 49 79.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 1.5e-13 80.9 131 42.7
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 3.3e-13 79.7 53 69.8
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.8e-12 76.6 79 49.4
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 8.1e-12 75.1 49 69.4
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 1.1e-11 74.7 52 65.4
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 9.9e-10 68.2 56 58.9
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 9.2e-08 61.6 50 54.0
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.7e-07 60.1 44 56.8
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 7.8e-07 58.5 77 48.1
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 5.1e-06 55.8 71 46.5


User provided reference genes

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