Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.0e-159 566.6 280 100.0
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 2.5e-60 236.5 283 50.9
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.5e-57 227.3 284 49.3
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 4.4e-57 225.7 280 48.2
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.7e-56 223.8 278 48.9
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.8e-56 223.0 282 49.6
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.4e-55 220.7 291 47.8
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 5.4e-55 218.8 281 49.8
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 9.1e-55 218.0 281 49.8
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.0e-53 214.5 272 48.5
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 8.6e-53 211.5 300 47.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 3.3e-52 209.5 289 46.7
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.6e-51 207.2 285 45.3
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 2.8e-51 206.5 293 45.4
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 4.7e-51 205.7 284 45.8
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 2.6e-49 199.9 280 49.3
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 7.5e-49 198.4 276 48.2
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.3e-48 197.6 286 47.6
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.3e-48 197.6 283 46.3
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.7e-48 197.2 280 47.1
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 4.9e-48 195.7 294 45.6
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 4.9e-48 195.7 282 46.8
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 4.9e-48 195.7 294 45.2
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 6.3e-48 195.3 286 43.4
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.8e-47 193.7 299 44.5
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 2.4e-47 193.4 298 44.6
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.4e-47 192.2 297 44.4
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.6e-46 190.7 292 44.5
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.6e-46 190.7 281 44.1
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.7e-46 189.9 293 45.1
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 2.7e-46 189.9 278 45.0
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 3.5e-46 189.5 283 45.9
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 7.8e-46 188.3 280 44.6
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.7e-45 187.2 282 46.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.7e-45 187.2 260 45.0
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 2.3e-45 186.8 283 45.6
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 3.9e-45 186.0 269 44.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 6.6e-45 185.3 267 44.9
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.9e-44 183.7 280 44.3
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.6e-43 180.6 273 44.3
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.8e-43 179.9 287 43.9
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 3.6e-43 179.5 242 48.3
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.0e-42 177.9 289 41.9
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.3e-42 176.8 290 43.8
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.3e-42 176.8 290 43.8
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.5e-41 174.1 285 41.8
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 5.8e-41 172.2 275 44.7
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 5.8e-41 172.2 349 37.8
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 3.7e-40 169.5 241 46.1
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 3.7e-40 169.5 271 41.3
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 1.9e-39 167.2 282 43.6
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 3.2e-39 166.4 278 41.4
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 7.0e-39 165.2 306 40.5
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.0e-38 163.7 231 45.9
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.0e-38 163.7 257 45.1
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.7e-38 163.3 231 45.0
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 5.0e-37 159.1 280 39.6
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 6.6e-37 158.7 275 42.9
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 8.6e-37 158.3 278 40.3
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.1e-36 157.9 280 39.3
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.1e-36 157.9 280 39.3
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.5e-36 157.5 281 42.0
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.2e-35 154.5 277 39.0
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.8e-35 153.3 279 38.7
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 8.1e-35 151.8 273 41.8
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 8.1e-35 151.8 237 45.6
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 5.2e-34 149.1 272 39.7
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 8.9e-34 148.3 304 37.2
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.2e-33 147.9 290 37.9
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.5e-33 147.5 278 40.6
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 2.0e-33 147.1 283 39.2
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 2.6e-33 146.7 278 40.3
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 7.5e-33 145.2 329 36.2
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 4.9e-32 142.5 289 37.4
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.9e-31 140.6 287 37.6
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.2e-31 139.8 243 42.0
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 6.0e-30 135.6 290 36.9
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 6.0e-30 135.6 295 38.0
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 7.8e-30 135.2 292 37.0
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.0e-29 134.8 292 37.0
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.3e-29 134.4 292 37.7
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.7e-29 134.0 303 36.0
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 2.3e-29 133.7 106 65.1
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 3.0e-29 133.3 271 36.9
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 3.0e-29 133.3 295 36.6
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.9e-29 132.9 292 36.6
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 8.6e-29 131.7 238 39.9
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.5e-28 131.0 244 38.9
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.9e-28 130.6 295 35.9
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.9e-28 130.6 164 48.2
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.5e-28 130.2 112 60.7
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 3.3e-28 129.8 294 35.4
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 3.3e-28 129.8 280 38.6
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.3e-28 129.4 288 36.1
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 5.6e-28 129.0 103 65.0
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.2e-27 127.9 246 40.7
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.6e-27 127.5 271 38.7
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.1e-27 127.1 288 35.8
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 6.2e-27 125.6 288 35.8
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.8e-26 124.0 282 36.9
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.8e-26 124.0 291 36.8
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.2e-25 121.3 236 41.9
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 2.0e-25 120.6 287 35.5
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.4e-23 113.6 106 59.4
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.4e-23 113.6 247 38.5
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 3.2e-23 113.2 290 33.4
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 2.1e-22 110.5 185 39.5
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 6.0e-22 109.0 274 33.9
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.7e-21 107.5 267 33.7
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 3.0e-21 106.7 213 39.0
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.9e-20 104.0 297 35.7
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 4.3e-20 102.8 278 36.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 7.3e-20 102.1 103 55.3
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 9.6e-20 101.7 203 37.9
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.6e-19 100.9 245 35.9
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 4.7e-19 99.4 229 36.2
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 6.2e-19 99.0 252 32.1
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 2.4e-18 97.1 149 44.3
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 5.2e-18 95.9 199 32.7
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.8e-18 95.5 132 44.7
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 7.6e-17 92.0 208 32.7
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 1.1e-15 88.2 257 30.4
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 5.4e-15 85.9 229 31.9
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.2e-14 84.7 87 48.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 6.0e-14 82.4 95 46.3
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-13 81.3 49 71.4
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.9e-12 77.4 79 49.4
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.3e-12 76.3 79 48.1
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-10 71.2 236 31.4
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 9.0e-10 68.6 110 40.9
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.5e-09 67.8 116 40.5
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 4.4e-09 66.2 242 31.8
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 7.6e-09 65.5 86 45.3
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 7.6e-09 65.5 89 41.6
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-07 61.6 92 39.1
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.6e-06 57.8 82 36.6
Atru.chr9.1025 Acer truncatum HOM05D001735 ORTHO05D001640 3.5e-06 56.6 289 26.6


User provided reference genes

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