Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009308001 Vitis vinifera HOM05D007433 ORTHO05D009199 3.0e-57 224.9 112 100.0
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 7.4e-40 167.2 110 77.3
Hma1.2p1_1170F.1_g263410 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 1.5e-37 159.5 107 78.5
Manes.05G183000 Manihot esculenta HOM05D007433 ORTHO05D009199 1.5e-37 159.5 104 78.8
Haze_06413 Corylus avellana HOM05D007433 ORTHO05D009199 5.9e-37 157.5 111 72.1
Potri.014G013600 Populus trichocarpa HOM05D007433 ORTHO05D009199 1.0e-36 156.8 114 71.9
Thecc.08G085300 Theobroma cacao HOM05D007433 ORTHO05D009199 2.2e-36 155.6 109 76.1
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 5.0e-36 154.5 113 71.7
Rhsim07G0217700 Rhododendron simsii HOM05D007433 ORTHO05D009199 5.0e-36 154.5 114 74.6
Cfa013749 Carpinus fangiana HOM05D007433 ORTHO05D009199 1.9e-35 152.5 105 74.3
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.5e-35 152.1 110 72.7
vmacro04593 Vaccinium macrocarpon HOM05D007433 ORTHO05D009199 3.2e-35 151.8 107 72.9
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 9.4e-35 150.2 113 70.8
TAR376G0199 Trochodendron aralioides HOM05D007433 ORTHO05D009199 1.2e-34 149.8 105 72.4
Potri.002G116200 Populus trichocarpa HOM05D007433 ORTHO05D009199 6.1e-34 147.5 115 68.7
Actinidia29630 Actinidia chinensis HOM05D001492 ORTHO05D001400 1.0e-33 146.7 111 67.6
COL.COLO4_28471 Corchorus olitorius HOM05D007433 ORTHO05D009199 2.3e-33 145.6 109 73.4
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 1.1e-32 143.3 110 67.3
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 1.5e-32 142.9 94 75.5
Actinidia19585 Actinidia chinensis HOM05D002375 ORTHO05D002457 2.0e-32 142.5 103 68.0
Manes.18G048800 Manihot esculenta HOM05D007433 ORTHO05D009199 2.6e-32 142.1 104 70.2
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 1.3e-31 139.8 110 70.0
Phvul.009G073600 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 1.3e-31 139.8 115 66.1
TPR.G33670 Trifolium pratense HOM05D007433 ORTHO05D009199 3.7e-31 138.3 114 67.5
VMungo1309G0469 Vigna mungo HOM05D007433 ORTHO05D009199 3.7e-31 138.3 112 67.0
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 1.8e-30 136.0 111 68.5
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 4.1e-30 134.8 105 70.5
Sabra02G0091500 Salix brachista HOM05D007433 ORTHO05D009199 1.5e-29 132.9 115 65.2
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 4.5e-29 131.3 105 68.6
Nn5g30654 Nelumbo nucifera HOM05D007433 ORTHO05D009199 5.9e-29 131.0 99 67.7
Lj1g0004253 Lotus japonicus HOM05D007433 ORTHO05D009199 7.7e-29 130.6 116 64.7
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 1.0e-28 130.2 119 63.9
Gohir.A02G080400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.7e-28 129.4 107 69.2
Gohir.D02G088300 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.7e-28 129.4 107 69.2
Gorai.005G098900 Gossypium raimondii HOM05D007433 ORTHO05D009199 1.7e-28 129.4 107 69.2
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 1.7e-28 129.4 108 69.4
Eucgr.F00094 Eucalyptus grandis HOM05D007433 ORTHO05D009199 6.5e-28 127.5 95 68.4
Solyc04g077570.1 Solanum lycopersicum HOM05D007433 ORTHO05D009199 1.1e-27 126.7 100 65.0
Medtr3g103330 Medicago truncatula HOM05D007433 ORTHO05D009199 1.9e-27 125.9 104 65.4
Glyma.06G048300 Glycine max HOM05D007433 ORTHO05D009199 2.5e-27 125.6 119 63.0
Lalb_Chr11g0062981 Lupinus albus HOM05D007433 ORTHO05D009199 3.2e-27 125.2 120 60.8
Glyma.04G047400 Glycine max HOM05D007433 ORTHO05D009199 9.4e-27 123.6 100 70.0
Psat5g037160 Pisum sativum HOM05D007433 ORTHO05D009199 9.4e-27 123.6 115 61.7
PGSC0003DMG400004914 Solanum tuberosum HOM05D007433 ORTHO05D009199 2.1e-26 122.5 109 61.5
TAR381G0154 Trochodendron aralioides HOM05D007433 ORTHO05D009199 2.1e-26 122.5 111 62.2
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 2.7e-26 122.1 105 63.8
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 4.7e-26 121.3 115 60.9
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 6.1e-26 120.9 108 63.0
MD15G1066100 Malus domestica HOM05D007433 ORTHO05D009199 8.0e-26 120.6 104 60.6
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 1.4e-25 119.8 104 63.5
Sc02g0008080 Simmondsia chinensis HOM05D007433 ORTHO05D009199 1.4e-25 119.8 114 58.8
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.8e-25 119.4 112 59.8
HanXRQChr10g0295351 Helianthus annuus HOM05D007433 ORTHO05D009199 2.3e-25 119.0 105 63.8
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 3.0e-25 118.6 110 60.9
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 5.2e-25 117.9 111 58.6
Nitab4.5_0013161g0010 Nicotiana tabacum HOM05D007433 ORTHO05D009199 6.7e-25 117.5 103 65.0
Sopen04g031210 Solanum pennellii HOM05D007433 ORTHO05D009199 8.8e-25 117.1 111 62.2
Gohir.A05G211600 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.0e-24 115.9 96 64.6
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 2.0e-24 115.9 109 59.6
Cpa.g.sc142.56 Carica papaya HOM05D007433 ORTHO05D009199 5.7e-24 114.4 111 63.1
Gorai.009G221600 Gossypium raimondii HOM05D007433 ORTHO05D009199 5.7e-24 114.4 96 63.5
CAN.G1239.9 Capsicum annuum HOM05D007433 ORTHO05D009199 7.4e-24 114.0 97 60.8
Gohir.D05G214900 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.3e-23 113.2 96 62.5
AUR62035005 Chenopodium quinoa HOM05D007433 ORTHO05D009199 1.7e-23 112.8 114 57.0
Lalb_Chr08g0245211 Lupinus albus HOM05D007433 ORTHO05D009199 2.8e-23 112.1 106 60.4
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 2.8e-23 112.1 89 69.7
RcHm_v2.0_Chr6g0309931 Rosa chinensis HOM05D007433 ORTHO05D009199 1.1e-22 110.2 111 63.1
EL10Ac1g02355 Beta vulgaris HOM05D007433 ORTHO05D009199 1.8e-22 109.4 122 52.5
FvH4_2g32740 Fragaria vesca HOM05D007433 ORTHO05D009199 1.8e-22 109.4 112 63.4
FAN15G2820 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.8e-22 109.4 111 62.2
FAN24G3110 Fragaria x ananassa HOM05D007433 ORTHO05D009199 1.8e-22 109.4 112 63.4
Ciclev10002882m.g Citrus clementina HOM05D007433 ORTHO05D009199 2.4e-22 109.0 111 58.6
FAN20G2053 Fragaria x ananassa HOM05D007433 ORTHO05D009199 5.3e-22 107.8 112 60.7
FAN27G2289 Fragaria x ananassa HOM05D007433 ORTHO05D009199 5.3e-22 107.8 111 61.3
Oeu014281.1 Olea europaea HOM05D007433 ORTHO05D009199 1.2e-21 106.7 101 63.4
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 2.6e-21 105.5 72 73.6
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 8.5e-20 100.5 112 56.2
Ca_15891_v3 Cicer arietinum L. HOM05D007433 ORTHO05D009199 1.5e-19 99.8 112 58.0
VMungo0647G2383 Vigna mungo HOM05D007433 ORTHO05D009199 1.9e-19 99.4 106 53.8
Glyma.17G233300 Glycine max HOM05D007433 ORTHO05D009199 1.2e-18 96.7 107 57.0
Phvul.001G029300 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 4.7e-18 94.7 105 55.2
Migut.C00395 Erythranthe guttata HOM05D007433 ORTHO05D009199 4.0e-17 91.7 110 54.5
Atru.chr13.863 Acer truncatum HOM05D007433 ORTHO05D009199 2.0e-16 89.4 81 59.3
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 5.7e-16 87.8 105 54.3
Phvul.011G135200 Phaseolus vulgaris HOM05D007433 ORTHO05D009199 1.1e-14 83.6 88 56.8
Hma1.2p1_3243F.1_g334320 Hydrangea macrophylla HOM05D007433 ORTHO05D009199 5.9e-13 77.8 105 51.4
DCAR_008860 Daucus carota HOM05D007433 ORTHO05D009199 2.9e-12 75.5 85 52.9
Potri.014G007000 Populus trichocarpa HOM05D007433 ORTHO05D009199 6.5e-12 74.3 80 52.5
Manes.13G109500 Manihot esculenta HOM05D007433 ORTHO05D009199 2.5e-11 72.4 67 56.7
SalBow3G4039 Salvia bowleyana HOM05D007433 ORTHO05D009199 4.7e-10 68.2 47 66.0
COL.COLO4_11609 Corchorus olitorius HOM05D007433 ORTHO05D009199 1.8e-09 66.2 48 64.6
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 1.8e-09 66.2 62 54.8
Atru.chr3.1055 Acer truncatum HOM05D007433 ORTHO05D009199 3.0e-09 65.5 71 53.5
Cfa004384 Carpinus fangiana HOM05D007433 ORTHO05D009199 3.0e-09 65.5 93 43.0
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 3.0e-09 65.5 96 45.8
Thecc.01G075800 Theobroma cacao HOM05D007433 ORTHO05D009199 6.8e-09 64.3 80 46.2
Prupe.6G217400 Prunus persica HOM05D020383 ORTHO05D022607 2.0e-08 62.8 108 39.8
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 2.6e-08 62.4 69 52.2
Gohir.A02G150000 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.6e-08 62.4 49 59.2
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 2.6e-08 62.4 101 46.5
Eucgr.H02327 Eucalyptus grandis HOM05D007433 ORTHO05D009199 4.4e-08 61.6 67 46.3
Gorai.003G032000 Gossypium raimondii HOM05D007433 ORTHO05D009199 4.4e-08 61.6 45 60.0
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 5.7e-08 61.2 54 55.6
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 7.5e-08 60.8 50 58.0
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 7.5e-08 60.8 54 51.9
Gohir.D03G030400 Gossypium hirsutum HOM05D007433 ORTHO05D009199 1.7e-07 59.7 36 72.2
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 2.8e-07 58.9 48 58.3
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 6.3e-07 57.8 52 48.1
Os03g0675500 Oryza sativa ssp. japonica HOM05D007433 ORTHO05D003347 6.3e-07 57.8 57 54.4
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 6.3e-07 57.8 67 49.3
Haze_15029 Corylus avellana HOM05D007433 ORTHO05D020523 8.3e-07 57.4 97 39.2
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.3e-07 57.4 48 58.3
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.3e-07 57.4 48 58.3
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 8.3e-07 57.4 48 58.3
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 8.3e-07 57.4 53 47.2
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.1e-06 57.0 75 40.0
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.1e-06 57.0 48 62.5
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.1e-06 57.0 53 47.2
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.1e-06 57.0 53 47.2
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.1e-06 57.0 53 47.2
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.1e-06 57.0 54 53.7
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.4e-06 56.6 48 56.2
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.4e-06 56.6 48 56.2
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.4e-06 56.6 48 56.2
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.4e-06 56.6 48 64.6
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.4e-06 56.6 54 53.7
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.8e-06 56.2 57 54.4
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.8e-06 56.2 48 60.4
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.4e-06 55.8 59 49.2
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.4e-06 55.8 50 54.0
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 2.4e-06 55.8 60 50.0
Nitab4.5_0001072g0010 Nicotiana tabacum HOM05D016189 ORTHO05D009199 2.4e-06 55.8 64 45.3
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.4e-06 55.8 48 58.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.4e-06 55.8 59 50.8
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.1e-06 55.5 51 54.9
FvH4_1g18110 Fragaria vesca HOM05D020383 ORTHO05D022607 3.1e-06 55.5 74 43.2
FAN19G0205 Fragaria x ananassa HOM05D020383 ORTHO05D022607 3.1e-06 55.5 74 43.2
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.1e-06 55.5 57 50.9
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 4.1e-06 55.1 57 50.9
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 4.1e-06 55.1 52 50.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.1e-06 55.1 57 47.4
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 5.4e-06 54.7 51 49.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 5.4e-06 54.7 46 58.7
Nitab4.5_0000142g0360 Nicotiana tabacum HOM05D016189 ORTHO05D009199 5.4e-06 54.7 47 53.2
QL06p038982 Quercus lobata HOM05D007433 ORTHO05D009199 5.4e-06 54.7 72 40.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 5.4e-06 54.7 55 52.7
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 5.4e-06 54.7 48 56.2
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.4e-06 54.7 48 58.3
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 7.0e-06 54.3 48 58.3
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 7.0e-06 54.3 47 55.3
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 9.1e-06 53.9 62 50.0
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.1e-06 53.9 49 55.1
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 9.1e-06 53.9 44 59.1
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 9.1e-06 53.9 51 54.9
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 9.1e-06 53.9 48 56.2
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 9.1e-06 53.9 48 54.2
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 9.1e-06 53.9 53 50.9


User provided reference genes

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