Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 8.7e-229 796.6 389 100.0
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 5.7e-188 661.0 403 81.6
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 5.3e-186 654.4 398 80.7
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.5e-185 651.4 404 78.7
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.0e-184 650.2 400 78.8
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 4.2e-183 644.8 389 81.7
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.8e-178 629.4 402 75.1
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.8e-178 629.4 401 76.3
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 4.1e-178 628.2 406 76.1
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 7.0e-178 627.5 401 76.3
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.2e-177 626.7 439 71.3
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.3e-176 623.2 402 75.1
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 3.8e-176 621.7 404 76.0
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.4e-175 619.8 406 74.4
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 3.2e-175 618.6 376 80.6
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 7.2e-175 617.5 406 74.1
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 9.4e-175 617.1 402 75.1
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 2.7e-174 615.5 393 75.3
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 4.7e-174 614.8 391 77.2
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.0e-173 613.6 402 74.9
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.0e-173 613.6 396 75.3
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.8e-173 612.8 359 81.1
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.8e-173 612.8 359 81.1
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 1.8e-173 612.8 403 72.7
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.8e-173 612.8 392 76.8
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 3.0e-173 612.1 403 75.7
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 8.8e-173 610.5 402 73.1
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.5e-172 609.8 396 75.5
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.0e-172 609.4 389 77.1
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.0e-172 609.4 352 83.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 2.0e-172 609.4 417 73.9
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 2.6e-172 609.0 392 75.8
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 2.6e-172 609.0 389 77.1
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 4.4e-172 608.2 399 74.2
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 4.4e-172 608.2 345 82.3
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 5.7e-172 607.8 393 75.1
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 7.4e-172 607.4 404 74.5
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 2.8e-171 605.5 366 80.9
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 4.8e-171 604.7 389 76.3
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 6.3e-171 604.4 333 84.1
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.1e-170 603.6 422 70.9
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 7.0e-170 600.9 407 72.2
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.2e-169 600.1 406 73.6
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.2e-169 600.1 364 78.8
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.6e-169 599.7 401 72.6
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.0e-169 599.4 389 75.3
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 2.0e-169 599.4 397 74.1
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.6e-169 599.0 346 81.5
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 3.5e-169 598.6 388 74.5
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 3.5e-169 598.6 406 73.4
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 5.9e-169 597.8 340 82.4
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 5.9e-169 597.8 347 80.7
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.0e-168 597.0 403 73.2
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.7e-168 596.3 354 80.2
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.7e-168 596.3 342 82.7
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.7e-168 596.3 393 73.5
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 2.2e-168 595.9 350 79.7
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 2.9e-168 595.5 403 72.7
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 5.0e-168 594.7 416 72.1
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 5.0e-168 594.7 353 80.2
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.5e-167 593.2 350 79.7
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.5e-167 593.2 368 76.6
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 4.2e-167 591.7 340 81.2
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 4.2e-167 591.7 388 72.9
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 7.2e-167 590.9 389 73.0
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 9.4e-167 590.5 402 73.1
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.2e-166 590.1 361 78.7
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 2.1e-166 589.3 359 78.8
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 3.6e-166 588.6 399 71.7
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 4.7e-166 588.2 341 81.8
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 8.0e-166 587.4 411 70.8
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 6.8e-165 584.3 409 69.4
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 6.8e-165 584.3 406 70.2
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 8.8e-165 583.9 406 69.7
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.5e-164 583.2 347 81.0
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.5e-164 583.2 384 74.0
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.6e-164 582.4 409 69.7
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 4.4e-164 581.6 334 81.4
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.5e-164 580.9 350 78.9
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 7.5e-164 580.9 342 80.1
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 7.5e-164 580.9 411 70.3
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 9.7e-164 580.5 407 70.3
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.3e-163 580.1 412 70.4
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.7e-163 579.7 410 70.0
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 2.2e-163 579.3 394 72.6
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 2.2e-163 579.3 396 71.7
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 3.7e-163 578.6 406 70.2
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 6.3e-163 577.8 358 77.4
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 8.3e-163 577.4 400 73.5
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 8.3e-163 577.4 400 73.5
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.1e-162 577.0 381 73.0
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 3.1e-162 575.5 402 72.1
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 4.1e-162 575.1 410 68.8
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.6e-161 573.2 387 72.1
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 2.0e-161 572.8 400 73.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.3e-160 570.1 384 73.2
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 6.5e-160 567.8 343 77.3
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 8.5e-160 567.4 333 77.5
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.1e-159 567.0 354 78.5
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 2.1e-158 562.8 390 69.7
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 2.3e-157 559.3 355 73.5
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 6.8e-157 557.8 405 67.7
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.2e-156 557.0 338 78.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 5.7e-156 554.7 389 69.7
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 4.8e-155 551.6 350 74.6
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 9.1e-154 547.4 330 77.0
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.2e-153 547.0 298 85.9
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 7.7e-153 544.3 410 67.1
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 5.0e-152 541.6 406 66.7
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 8.0e-150 534.3 368 70.7
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.8e-149 533.1 330 75.5
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 5.2e-149 531.6 338 74.9
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 5.7e-148 528.1 350 74.0
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 2.8e-147 525.8 283 85.9
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 9.2e-146 520.8 333 72.7
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 7.8e-145 517.7 298 79.9
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 5.0e-144 515.0 332 72.6
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.6e-142 510.0 409 63.8
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 6.1e-142 508.1 329 70.5
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 2.6e-140 502.7 391 61.4
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-138 496.9 325 72.6
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 5.4e-138 495.0 428 62.6
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.0e-136 489.2 330 73.0
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 3.3e-135 485.7 334 68.3
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-133 478.8 279 79.2
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 8.3e-131 471.1 335 69.0
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.9e-130 469.9 335 64.5
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 8.6e-120 434.5 367 61.0
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.1e-118 429.9 329 61.1
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 2.1e-113 413.3 263 76.0
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.5e-111 406.4 280 71.1
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 9.9e-108 394.4 321 58.9
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.7e-105 386.3 295 61.0
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.5e-105 386.0 331 61.9
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 5.8e-92 342.0 188 87.2
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 8.4e-91 338.2 234 71.4
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.2e-90 335.9 248 69.0
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-87 327.0 344 52.6
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.9e-80 302.8 393 44.8
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 6.5e-75 285.4 157 84.7
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.0e-72 278.1 275 53.8
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 1.6e-65 254.2 143 80.4
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 6.3e-62 242.3 314 44.3
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-59 233.4 236 53.8
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-56 224.6 226 54.9
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 3.8e-51 206.5 290 43.8
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.7e-46 191.0 116 77.6
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.7e-46 189.9 130 73.1
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 5.9e-44 182.6 131 68.7
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 3.8e-43 179.9 130 71.5
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 3.8e-43 179.9 130 71.5
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-40 169.1 122 68.9
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-31 140.2 159 50.9
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-31 140.2 159 50.9
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 4.4e-31 139.8 231 37.7
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 2.4e-21 107.5 169 39.6
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.6e-18 96.3 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.6e-18 96.3 53 75.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 2.9e-14 84.0 51 76.5
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-07 61.6 39 74.4
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 2.0e-07 61.2 44 68.2
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 1.3e-06 58.5 35 74.3
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 3.7e-06 57.0 41 65.9


User provided reference genes

Program Settings