Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.7e-169 599.4 332 100.0
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.8e-119 432.6 330 73.9
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 5.3e-118 428.3 330 73.0
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 6.5e-116 421.4 332 71.7
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.5e-115 419.5 330 67.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 4.6e-114 415.2 323 68.1
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.0e-113 414.1 330 70.9
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.3e-113 413.7 328 66.2
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.7e-113 411.4 330 70.3
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.9e-112 409.8 332 64.2
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 9.7e-112 407.5 330 66.1
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 9.7e-112 407.5 334 64.7
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 6.9e-110 401.4 331 65.9
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.0e-108 395.2 332 63.6
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.5e-108 394.8 324 65.1
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.1e-107 394.0 323 66.3
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.4e-107 393.7 332 70.2
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.6e-106 390.2 332 69.0
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 5.1e-105 385.2 332 68.1
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.7e-105 384.8 329 62.9
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 4.3e-104 382.1 333 68.8
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 2.2e-103 379.8 332 60.2
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.7e-103 379.0 332 59.0
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-102 377.5 324 62.0
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 3.1e-102 375.9 332 64.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 4.1e-102 375.6 338 61.8
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 2.0e-101 373.2 331 57.7
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.0e-101 373.2 332 58.7
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.9e-101 371.7 332 60.2
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.0e-100 370.9 333 61.6
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.2e-100 369.8 324 60.8
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.9e-100 369.4 324 60.8
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 6.5e-100 368.2 384 53.9
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.5e-99 366.3 333 67.0
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-99 365.5 338 67.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 9.4e-99 364.4 332 63.6
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 1.0e-97 360.9 330 63.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.0e-97 360.9 332 65.1
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 5.1e-97 358.6 332 61.4
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 5.7e-96 355.1 334 57.5
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 9.7e-96 354.4 332 62.7
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.7e-95 353.6 333 65.2
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 3.7e-95 352.4 339 60.2
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.2e-93 347.4 334 56.9
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.5e-93 345.5 330 57.9
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.3e-92 344.0 339 64.3
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.3e-92 344.0 332 54.2
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 6.5e-92 341.7 331 55.3
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.4e-91 340.5 319 60.5
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 4.2e-91 339.0 321 65.7
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.1e-90 336.7 332 60.8
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.7e-90 336.3 392 50.0
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 8.0e-90 334.7 332 61.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.4e-89 334.0 332 56.3
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.4e-89 334.0 286 69.6
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 3.0e-89 332.8 332 56.3
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.0e-89 332.8 332 58.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 3.0e-89 332.8 327 59.9
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.2e-89 332.0 332 61.4
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.2e-89 332.0 305 66.2
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 8.8e-89 331.3 333 56.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.5e-88 330.5 332 61.1
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.0e-88 330.1 337 56.7
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 7.4e-88 328.2 334 59.9
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.3e-87 327.4 333 61.3
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.3e-87 327.4 333 61.3
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 1.4e-86 323.9 333 54.7
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.4e-86 323.9 332 54.2
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.4e-86 323.2 332 59.9
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.1e-86 322.8 332 59.3
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 5.3e-86 322.0 332 54.2
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.0e-85 320.1 404 50.5
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 2.2e-84 316.6 392 48.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 2.9e-84 316.2 389 54.0
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.9e-84 316.2 332 56.0
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 3.8e-84 315.8 332 55.1
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 6.5e-84 315.1 332 54.5
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.0e-81 307.8 331 53.8
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 4.0e-81 305.8 332 59.0
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 8.8e-81 304.7 327 61.5
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.5e-80 303.9 334 57.2
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 2.8e-79 299.7 306 58.2
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 6.3e-79 298.5 332 56.9
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.7e-77 293.1 332 53.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.5e-77 292.7 324 53.7
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.5e-77 292.7 333 51.4
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.9e-76 289.7 326 51.5
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.9e-76 289.7 325 52.3
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.4e-73 280.8 371 46.9
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.0e-73 279.6 324 54.3
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 8.8e-73 278.1 318 50.6
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.5e-72 277.3 324 55.9
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.6e-72 276.6 340 48.8
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 7.5e-72 275.0 330 52.1
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-69 267.7 336 53.0
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 4.5e-69 265.8 324 50.3
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.9e-68 263.1 349 47.9
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 8.6e-68 261.5 277 52.3
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 3.3e-67 259.6 269 53.2
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 5.5e-67 258.8 364 44.5
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 8.0e-66 255.0 335 46.0
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.4e-65 254.2 332 46.7
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.0e-65 253.1 382 42.9
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.6e-64 250.0 263 58.9
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.8e-63 246.5 330 49.4
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.7e-63 246.1 262 58.4
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.9e-63 245.7 389 41.6
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.1e-62 243.0 332 51.2
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 7.8e-61 238.4 332 50.6
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.3e-60 236.9 265 49.1
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 8.6e-60 235.0 334 50.9
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 3.3e-59 233.0 334 50.6
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.2e-58 231.1 276 48.6
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.6e-58 229.6 311 49.5
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 3.6e-58 229.6 334 48.8
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.7e-58 229.2 307 49.5
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.5e-56 224.2 363 46.8
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 5.8e-56 222.2 308 51.0
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.4e-54 217.6 364 40.1
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.4e-54 217.6 308 42.9
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 4.1e-54 216.1 303 46.9
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 6.0e-53 212.2 303 46.9
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.7e-52 210.7 196 58.2
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.3e-52 210.3 303 48.2
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-51 207.2 295 44.1
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.5e-51 206.8 310 48.1
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.2e-50 204.5 305 42.0
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.6e-50 204.1 332 41.9
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.6e-50 204.1 332 41.9
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.1e-50 203.8 315 47.9
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 6.2e-50 202.2 333 42.6
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.2e-47 193.7 298 46.3
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 7.0e-46 188.7 317 41.6
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.6e-45 186.0 176 59.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.0e-44 182.6 210 47.1
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 8.6e-44 181.8 176 54.5
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.3e-43 179.9 184 55.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 2.1e-42 177.2 123 73.2
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-41 174.1 122 72.1
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 5.2e-41 172.6 263 48.7
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 9.9e-40 168.3 328 37.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-39 167.5 152 59.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-37 161.0 376 33.5
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 2.3e-36 157.1 260 45.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 7.3e-35 152.1 139 60.4
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.7e-34 149.4 174 50.0
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-33 148.3 135 63.7
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-33 148.3 156 55.8
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-32 144.8 167 49.1
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-32 144.8 167 49.1
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-32 144.8 223 42.6
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.6e-32 143.7 136 63.2
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 6.4e-31 139.0 308 33.4
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 6.4e-31 139.0 105 68.6
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 5.4e-30 136.0 196 46.4
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 4.6e-29 132.9 291 38.8
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-28 131.7 124 59.7
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.9e-28 129.8 292 36.0
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.6e-28 129.0 124 53.2
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.6e-27 125.9 377 29.2
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 4.0e-25 119.8 297 36.0
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.9e-23 113.6 265 33.2
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.5e-19 100.5 335 29.6
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.1e-18 97.4 102 51.0
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 2.8e-18 97.1 275 32.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 8.1e-18 95.5 84 61.9
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-17 94.0 93 59.1
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 9.0e-17 92.0 48 89.6
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 5.8e-16 89.4 121 42.1
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.1e-14 85.1 178 34.3
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.1e-14 85.1 178 34.3
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 4.6e-13 79.7 118 42.4
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 4.6e-13 79.7 118 42.4
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.7e-10 70.1 226 29.2
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.4e-09 68.2 207 29.5
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.4e-09 68.2 104 49.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-09 67.8 60 56.7
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-09 67.0 91 49.5
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 9.0e-09 65.5 54 57.4
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.2e-06 56.6 34 76.5


User provided reference genes

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