Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1843.6 924 100.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1554.7 1007 77.8
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1525.8 1004 77.9
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1525.0 1012 77.1
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1512.7 1011 75.8
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1510.4 1005 76.4
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1509.2 1012 75.8
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1507.3 1011 75.7
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1505.3 1025 74.4
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1500.7 1011 75.8
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1500.3 1013 75.8
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1496.9 1013 74.7
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1491.1 1010 75.3
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1490.3 977 77.1
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1486.9 1009 74.6
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1483.8 996 76.0
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1481.1 1006 74.7
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1480.7 1010 73.7
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1007 74.5
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1474.1 1011 73.8
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1469.5 1005 74.9
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1468.4 1020 73.2
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1466.4 1002 75.0
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1464.9 986 74.5
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1462.2 1032 72.6
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1461.0 1006 74.2
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1459.1 1001 74.0
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1456.8 1018 72.2
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1455.3 965 76.6
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1451.4 1017 71.9
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1451.0 1032 72.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1450.3 990 75.5
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1449.9 1024 72.8
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1449.9 1017 71.8
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1444.5 1043 71.4
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1443.3 1019 71.6
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1442.6 1053 70.7
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1440.2 1010 73.3
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1437.9 1004 73.0
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 1007 72.9
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1422.5 1030 71.3
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1422.5 1011 72.7
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1421.8 1007 72.2
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1421.0 1009 72.1
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1417.5 1023 71.6
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1417.5 1000 71.7
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1412.9 1000 71.4
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1412.5 1000 71.9
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1411.0 1006 72.1
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1406.3 1011 72.7
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1406.0 1005 71.7
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1401.7 991 71.3
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1400.6 1012 70.7
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1397.5 1013 70.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1397.1 930 76.5
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1395.6 1013 70.8
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1395.2 984 72.0
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1395.2 1012 70.5
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1393.6 1012 70.8
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1392.5 1013 70.5
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1392.1 1012 70.7
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1391.7 1006 69.9
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1391.7 1012 70.7
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1391.7 1012 70.7
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1391.7 1013 70.2
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1390.9 1034 69.5
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1390.6 1020 69.6
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1389.8 1012 70.6
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1387.5 980 73.1
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1387.1 975 72.5
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1387.1 1006 70.8
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1372.5 1014 69.6
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1372.1 971 72.8
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1367.8 962 72.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1364.0 1028 68.5
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1362.1 1086 66.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 1019 67.8
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1354.7 990 70.0
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1354.7 1009 69.1
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1350.9 997 70.4
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1329.7 1016 67.0
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1327.8 1017 67.4
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1313.9 1017 66.1
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1311.6 975 69.7
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1305.4 945 72.0
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1305.4 1016 65.8
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1301.6 989 68.3
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1296.2 1103 63.0
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1289.2 1006 66.7
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1287.7 975 68.4
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1285.4 974 67.8
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1285.0 977 68.0
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1284.2 955 69.9
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1282.7 975 68.1
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1271.5 1043 64.0
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1271.1 1021 65.5
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1268.4 1014 65.4
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1256.5 1030 63.9
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1251.1 981 66.6
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1251.1 946 68.7
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1243.8 906 70.1
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1235.3 1033 62.6
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1228.8 945 66.7
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1227.2 1141 57.8
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1214.1 863 73.5
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1211.8 977 63.8
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1210.7 1174 56.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1205.7 919 68.1
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1205.3 994 64.7
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1201.8 1005 63.9
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1199.1 1042 61.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1192.6 922 69.1
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1171.8 1003 60.4
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1169.8 1002 60.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1169.5 1014 61.0
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1135.9 1019 59.8
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1112.1 890 66.3
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1100.5 917 61.7
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1088.2 862 65.8
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 2.5e-311 1072.0 810 69.5
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 1.3e-302 1043.1 886 62.6
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 5.3e-269 931.4 861 58.1
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 6.8e-264 914.4 1026 50.1
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.6e-263 912.5 780 62.6
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.4e-261 904.8 1028 49.5
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.3e-259 899.4 911 52.7
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.4e-248 863.6 629 71.1
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 6.4e-246 854.7 625 71.5
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 7.3e-234 814.7 979 46.4
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 4.7e-233 812.0 980 46.6
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 5.2e-224 781.9 641 64.9
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.4e-223 779.2 846 48.5
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.1e-216 757.7 615 64.6
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 5.1e-211 738.8 1219 39.7
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 1.5e-186 657.5 392 83.9
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.2e-183 647.9 360 86.7
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 4.5e-167 592.8 390 77.2
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 3.5e-151 540.0 398 71.1
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 3.8e-150 536.6 433 66.7
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.2e-141 505.8 554 49.6
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 7.3e-133 479.2 525 51.8
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 1.2e-108 398.7 238 83.6
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 1.7e-102 378.3 258 74.0
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 3.0e-102 377.5 205 84.4
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 5.1e-102 376.7 304 64.8
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 5.3e-91 340.1 778 31.6
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 5.5e-88 330.1 240 69.6
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.9e-81 307.0 231 70.6
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 3.3e-77 294.3 162 84.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.3e-75 287.0 150 90.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 9.4e-56 223.0 173 62.4
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.7e-52 212.2 171 68.4
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 6.3e-52 210.3 206 57.3
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 8.2e-52 209.9 833 26.4
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 5.9e-50 203.8 114 80.7
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.2e-47 196.1 148 72.3
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.1e-40 172.9 90 82.2
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.5e-40 172.6 150 59.3
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 8.0e-39 166.8 204 49.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 1.1e-35 156.4 132 62.9
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.2e-32 143.7 88 72.7
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.1e-31 142.1 77 87.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.0e-29 135.6 132 56.8
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 2.5e-24 118.6 79 73.4
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 5.6e-24 117.5 125 52.0
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 7.3e-24 117.1 96 60.4
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 5.0e-17 94.4 95 53.7
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 5.0e-17 94.4 95 53.7
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 5.0e-17 94.4 106 50.9
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.9e-16 92.4 77 62.3
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 6.2e-15 87.4 113 41.6
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.4e-11 76.3 50 72.0
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.4e-11 76.3 46 78.3
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-09 68.9 65 52.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 8.6e-09 67.0 77 50.6


User provided reference genes

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