Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 5.1e-213 744.2 389 100.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.8e-160 568.5 381 71.4
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.5e-159 566.6 346 78.9
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.2e-159 565.5 345 78.3
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.1e-158 562.8 347 78.1
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 5.2e-157 558.1 344 78.5
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 5.7e-156 554.7 343 77.3
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.7e-156 554.7 343 77.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 6.3e-155 551.2 346 76.6
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 6.3e-155 551.2 345 75.4
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.8e-154 549.7 346 73.7
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 7.7e-153 544.3 345 75.7
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.0e-152 543.9 342 76.6
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 2.9e-152 542.3 344 74.4
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.8e-152 542.0 339 77.6
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 5.0e-152 541.6 343 76.1
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.6e-152 540.8 345 76.5
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 2.5e-151 539.3 345 74.5
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 4.2e-151 538.5 346 73.1
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 7.2e-151 537.7 348 75.0
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.2e-150 537.0 346 72.5
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.2e-150 537.0 345 74.8
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 4.7e-150 535.0 344 75.0
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.7e-150 535.0 346 72.3
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.8e-149 533.1 346 72.3
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 3.0e-149 532.3 346 73.1
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 3.0e-149 532.3 349 72.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 5.2e-149 531.6 345 73.0
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.5e-148 530.0 346 74.6
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 5.7e-148 528.1 347 73.2
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 7.5e-148 527.7 345 72.8
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 7.5e-148 527.7 343 73.2
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.3e-147 526.9 343 73.2
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.3e-147 526.9 342 73.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.7e-147 526.6 339 74.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-147 526.6 339 74.9
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.7e-147 526.6 347 72.9
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.7e-147 526.6 345 73.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 2.2e-147 526.2 345 72.5
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.8e-147 525.8 345 71.3
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 3.7e-147 525.4 346 72.5
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.3e-147 524.6 340 75.0
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 8.3e-147 524.2 343 73.2
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 8.3e-147 524.2 339 74.3
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.4e-146 523.5 345 71.9
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.0e-146 521.2 345 71.9
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.6e-145 520.0 345 71.0
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.0e-145 519.6 344 72.4
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 3.5e-145 518.8 342 72.5
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 4.5e-145 518.5 343 72.6
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 5.9e-145 518.1 346 72.0
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.3e-144 516.9 342 72.8
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.7e-144 516.5 347 70.9
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.9e-144 515.8 342 72.8
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.9e-144 515.4 341 71.8
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.9e-144 515.4 341 71.8
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 3.9e-144 515.4 326 73.3
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.1e-143 513.8 340 72.6
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.1e-143 513.8 340 72.6
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.5e-143 513.5 343 72.0
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.9e-143 513.1 343 71.7
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 3.3e-143 512.3 348 71.8
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 9.5e-143 510.8 343 71.4
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.6e-142 510.0 340 72.1
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 2.1e-142 509.6 340 72.4
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 6.1e-142 508.1 338 71.6
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 8.0e-142 507.7 347 71.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.8e-141 506.5 346 72.0
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 8.9e-141 504.2 339 71.4
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.0e-140 503.1 342 71.6
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.8e-140 501.5 338 70.7
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.3e-139 500.4 343 69.4
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.2e-139 499.6 339 70.8
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.4e-138 496.9 343 69.1
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.9e-138 496.5 341 70.4
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.4e-138 496.1 356 68.3
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 3.2e-138 495.7 343 67.1
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 4.1e-138 495.4 346 69.1
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.2e-137 493.8 308 76.0
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.6e-137 493.4 341 70.1
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.7e-137 492.7 335 72.2
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 4.6e-137 491.9 345 68.7
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.3e-136 490.3 320 72.5
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 2.3e-136 489.6 341 69.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 5.0e-136 488.4 322 70.8
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.9e-135 486.5 337 68.8
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 7.3e-135 484.6 337 68.8
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.2e-134 483.8 347 68.0
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.6e-134 483.4 342 67.0
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.8e-134 482.6 341 68.3
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 3.6e-134 482.3 348 66.4
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 4.7e-134 481.9 309 74.4
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 3.1e-133 479.2 343 69.1
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 4.0e-133 478.8 338 67.5
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 8.9e-133 477.6 345 67.0
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 2.6e-132 476.1 346 66.5
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 5.8e-132 474.9 341 67.4
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 9.8e-132 474.2 302 73.8
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.3e-131 473.8 340 67.1
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 3.7e-131 472.2 340 67.1
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 8.3e-131 471.1 345 66.7
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 8.3e-131 471.1 345 67.2
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 4.6e-129 465.3 352 65.3
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 7.8e-129 464.5 344 66.0
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 1.0e-128 464.2 344 65.4
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.3e-128 463.8 349 66.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.1e-127 460.7 300 71.7
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 5.6e-127 458.4 306 71.2
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 9.5e-127 457.6 339 65.8
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.8e-125 453.4 345 66.4
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.3e-125 453.0 348 64.1
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 3.1e-125 452.6 341 66.3
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 9.9e-124 447.6 348 64.7
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 4.3e-119 432.2 344 62.5
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.2e-116 424.1 339 61.7
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 3.8e-115 419.1 349 59.9
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 4.2e-114 415.6 341 60.4
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.6e-113 412.1 340 59.7
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 3.9e-112 409.1 340 59.1
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 5.1e-112 408.7 302 63.6
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.9e-111 406.8 347 59.4
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.6e-110 403.7 336 59.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.1e-110 403.3 284 69.7
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.8e-110 402.9 320 61.6
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.8e-102 375.6 246 72.0
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.8e-102 375.6 324 59.0
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.8e-101 373.6 326 57.7
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 4.2e-98 362.5 348 53.4
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.6e-97 360.5 328 54.6
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.9e-96 355.9 303 59.7
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 4.3e-95 352.4 316 56.6
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.5e-90 336.7 219 72.6
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.2e-86 321.6 198 77.3
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 2.6e-84 316.6 204 74.5
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 4.3e-79 299.3 198 71.7
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.3e-78 295.4 211 68.7
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.2e-78 295.0 207 66.7
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 5.9e-76 288.9 254 56.3
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.9e-74 283.9 219 64.8
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 7.9e-73 278.5 177 75.7
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.8e-70 270.0 203 65.5
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 4.1e-69 266.2 231 58.9
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.7e-62 244.2 394 36.8
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 5.5e-58 229.2 304 40.1
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.3e-56 223.8 107 98.1
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 3.3e-55 219.9 178 62.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.7e-54 217.6 341 37.2
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 2.6e-47 193.7 352 37.2
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 6.8e-40 169.1 333 33.6
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.8e-40 169.1 116 70.7
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.8e-38 163.7 130 63.8
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 4.5e-36 156.4 108 67.6
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.3e-26 123.2 66 84.8
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.6e-20 104.8 57 80.7
GSVIVG01001056001 Vitis vinifera HOM05D004580 ORTHO05D439289 8.6e-11 72.4 84 47.6
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 2.9e-06 57.4 43 62.8


User provided reference genes

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