Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.0e-35 152.9 78 100.0
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 2.3e-32 141.7 74 94.6
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 5.2e-32 140.6 78 91.0
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.2e-31 139.4 74 91.9
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 3.4e-31 137.9 76 92.1
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.3e-30 136.0 76 89.5
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.3e-30 136.0 76 89.5
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.3e-30 136.0 76 88.2
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.8e-30 134.8 76 88.2
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.8e-30 134.8 76 86.8
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 4.8e-30 134.0 76 88.2
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 4.8e-30 134.0 75 88.0
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.4e-29 132.5 77 83.1
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 1.4e-29 132.5 78 83.3
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.4e-29 132.5 76 85.5
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 1.4e-29 132.5 76 85.5
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 3.1e-29 131.3 76 81.6
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 7.0e-29 130.2 76 84.2
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 84.8
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.0e-28 128.6 76 82.9
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.0e-28 128.6 76 82.9
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 2.7e-28 128.3 76 85.5
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.5e-28 127.5 76 82.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 5.9e-28 127.1 74 82.4
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 5.9e-28 127.1 79 82.3
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 7.7e-28 126.7 76 80.3
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 7.7e-28 126.7 79 79.7
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 7.7e-28 126.7 76 80.3
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 7.7e-28 126.7 76 80.3
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.0e-27 126.3 76 81.6
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.0e-27 126.3 76 81.6
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 2.9e-27 124.8 79 78.5
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.9e-27 124.8 76 78.9
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 2.9e-27 124.8 74 82.4
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 2.9e-27 124.8 74 82.4
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.9e-27 124.8 79 77.2
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 76.3
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 80.3
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 78.9
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 78.9
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 6.5e-27 123.6 76 80.3
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 6.5e-27 123.6 73 82.2
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 6.5e-27 123.6 76 76.3
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 6.5e-27 123.6 76 76.3
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 8.5e-27 123.2 76 77.6
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 8.5e-27 123.2 76 78.9
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 8.5e-27 123.2 79 78.5
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 1.1e-26 122.9 74 78.4
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.1e-26 122.9 76 80.3
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.1e-26 122.9 74 79.7
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.1e-26 122.9 76 80.3
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.5e-26 122.5 76 75.0
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.5e-26 122.5 76 76.3
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 76 77.6
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 2.5e-26 121.7 76 76.3
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 2.5e-26 121.7 76 76.3
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.5e-26 121.7 76 75.0
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 3.2e-26 121.3 76 73.7
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 5.5e-26 120.6 76 75.0
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 5.5e-26 120.6 72 76.4
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 9.4e-26 119.8 72 79.2
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.7e-25 118.2 76 72.4
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.7e-25 118.2 76 72.4
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.7e-25 118.2 72 76.4
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.6e-25 117.9 61 93.4
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.6e-25 117.9 75 73.3
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.6e-25 117.9 75 73.3
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.7e-25 117.5 74 74.3
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 4.7e-25 117.5 65 89.2
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 6.1e-25 117.1 76 75.0
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 6.1e-25 117.1 76 73.7
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 6.1e-25 117.1 76 72.4
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 6.1e-25 117.1 63 90.5
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 8.0e-25 116.7 76 69.7
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 8.0e-25 116.7 76 73.7
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 8.0e-25 116.7 73 76.7
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.0e-24 116.3 61 91.8
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.0e-24 116.3 76 76.3
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.8e-24 115.5 72 79.2
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 1.8e-24 115.5 79 72.2
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.3e-24 115.2 76 72.4
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.3e-24 115.2 98 62.2
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.0e-24 114.8 76 69.7
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.0e-24 114.8 69 76.8
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 4.0e-24 114.4 63 88.9
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 5.2e-24 114.0 77 70.1
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 6.8e-24 113.6 67 80.6
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 6.8e-24 113.6 76 68.4
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.8e-24 113.6 76 68.4
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 8.8e-24 113.2 79 72.2
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.2e-23 112.8 73 74.0
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 3.4e-23 111.3 74 70.3
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 3.4e-23 111.3 73 72.6
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 4.4e-23 110.9 75 69.3
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 4.4e-23 110.9 75 69.3
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 4.4e-23 110.9 76 67.1
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 7.5e-23 110.2 76 65.8
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-22 109.0 71 69.0
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 2.2e-22 108.6 73 74.0
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 71.1
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 2.8e-22 108.2 76 64.5
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.7e-22 107.8 78 67.9
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 6.3e-22 107.1 75 66.7
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 8.3e-22 106.7 76 64.5
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 8.3e-22 106.7 70 67.1
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.1e-21 106.3 76 64.5
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.1e-21 106.3 69 71.0
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.4e-21 105.9 69 71.0
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.8e-21 105.5 59 83.1
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.8e-21 105.5 76 65.8
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.8e-21 105.5 63 79.4
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 4.1e-21 104.4 57 87.7
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 3.5e-20 101.3 75 66.7
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 3.5e-20 101.3 75 66.7
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 3.5e-20 101.3 75 66.7
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 3.5e-20 101.3 75 66.7
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 3.5e-20 101.3 69 66.7
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 4.5e-20 100.9 54 85.2
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.0e-19 99.8 73 61.6
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.7e-19 99.0 76 59.2
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 6.6e-19 97.1 66 66.7
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.1e-18 96.3 76 57.9
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.1e-18 96.3 57 75.4
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.9e-18 95.5 76 56.6
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.5e-18 95.1 70 62.9
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 56.6
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 56.6
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 56.6
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 56.6
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.2e-17 92.8 81 54.3
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 4.7e-17 90.9 65 64.6
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 8.0e-17 90.1 64 64.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 8.0e-17 90.1 53 71.7
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 1.0e-16 89.7 63 65.1
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.0e-16 89.7 55 72.7
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.0e-16 89.7 59 66.1
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.3e-16 88.6 73 54.8
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 3.0e-16 88.2 73 54.8
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 4.4e-15 84.3 74 52.7
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.3e-14 82.8 74 52.7
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 1.8e-13 79.0 50 74.0
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 3.9e-11 71.2 64 56.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.5e-10 66.6 70 50.0
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.6e-09 65.9 64 50.0
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.0e-08 63.2 79 39.2
FAN18G4143 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.9e-06 55.1 75 44.0


User provided reference genes

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