Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 6.2e-249 863.6 420 100.0
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 2.7e-199 698.7 425 79.1
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.5e-199 698.4 425 78.8
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 5.5e-197 691.0 427 78.5
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 9.4e-197 690.3 424 77.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.4e-195 686.4 424 78.3
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.5e-194 682.9 425 77.6
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.4e-194 681.8 423 77.5
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 7.5e-194 680.6 425 77.2
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 4.8e-193 677.9 417 76.7
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 8.3e-193 677.2 426 76.1
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.8e-192 676.0 419 77.8
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 3.5e-191 671.8 426 76.8
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 3.5e-191 671.8 418 77.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.7e-190 669.5 428 76.2
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.9e-189 666.0 419 77.6
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 2.6e-186 655.6 433 72.3
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 5.7e-186 654.4 423 73.5
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 3.1e-184 648.7 420 73.8
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 2.7e-183 645.6 383 79.9
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.0e-182 643.7 424 73.1
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.3e-182 643.3 419 73.5
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 3.8e-182 641.7 430 73.3
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 5.0e-182 641.3 435 72.6
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.9e-181 639.4 420 73.6
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.9e-181 639.4 422 72.7
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 7.3e-181 637.5 424 75.0
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 2.8e-180 635.6 420 72.4
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.8e-180 635.6 417 74.3
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 4.7e-180 634.8 433 72.3
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.4e-179 633.3 420 74.0
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.4e-179 633.3 417 74.1
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.8e-179 632.9 420 72.6
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 8.9e-179 630.6 420 72.4
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.2e-178 630.2 435 70.6
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 1.2e-178 630.2 425 72.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.2e-178 630.2 426 72.8
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.5e-178 629.8 422 72.7
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 9.8e-178 627.1 420 71.4
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.3e-177 626.7 427 72.1
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.7e-177 626.3 435 70.8
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 2.9e-177 625.5 422 71.3
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 4.9e-177 624.8 421 71.5
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 6.4e-177 624.4 426 71.4
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 3.2e-176 622.1 487 66.1
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.2e-175 620.2 442 70.1
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 2.7e-175 619.0 422 73.2
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 7.8e-175 617.5 418 69.9
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 7.8e-175 617.5 421 70.3
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.3e-174 615.9 424 69.8
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 3.0e-174 615.5 422 71.1
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 5.0e-174 614.8 424 70.3
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 6.6e-174 614.4 417 71.2
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 8.6e-174 614.0 423 73.8
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.5e-173 613.2 422 69.7
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 3.3e-173 612.1 424 70.5
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 4.3e-173 611.7 424 70.0
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 5.6e-173 611.3 421 69.6
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 5.6e-173 611.3 421 70.5
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.2e-172 610.1 424 70.8
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.2e-172 610.1 420 70.2
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.6e-172 609.8 381 77.7
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 2.1e-172 609.4 420 70.5
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 2.8e-172 609.0 431 69.6
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.0e-171 607.1 410 71.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.4e-171 606.7 435 68.7
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.2e-170 603.6 420 69.5
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 2.0e-170 602.8 451 68.3
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.7e-169 599.7 426 70.4
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.2e-169 599.4 457 67.0
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 2.9e-169 599.0 422 69.7
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 4.1e-168 595.1 427 68.9
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 9.2e-168 594.0 431 68.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 3.5e-167 592.0 431 67.7
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 3.0e-166 589.0 472 64.4
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.9e-165 586.3 431 66.1
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.1e-164 582.8 399 72.2
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.7e-164 581.6 390 72.8
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.1e-163 578.9 434 66.1
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 5.2e-163 578.2 393 71.8
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 6.8e-163 577.8 418 69.9
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 4.1e-160 568.5 417 66.2
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.7e-159 565.8 418 69.1
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 2.7e-159 565.8 394 71.1
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 1.0e-158 563.9 428 65.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.9e-157 559.7 417 68.8
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.3e-157 558.5 329 79.6
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.6e-157 558.1 418 68.2
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 6.2e-156 554.7 420 65.5
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.2e-153 546.2 458 62.7
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 4.6e-151 538.5 448 63.2
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.9e-144 516.5 312 78.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.9e-144 516.5 417 65.0
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.2e-143 513.8 319 74.6
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 4.6e-143 511.9 419 63.0
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 7.8e-143 511.1 343 71.7
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.3e-142 510.4 307 76.9
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.3e-140 503.8 299 76.9
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 9.9e-138 494.2 302 76.5
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.1e-136 490.7 339 70.5
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 4.2e-136 488.8 423 59.6
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 4.0e-131 472.2 415 59.5
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.8e-129 465.7 327 69.7
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 4.2e-128 462.2 422 53.6
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.9e-126 455.7 434 55.5
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 7.4e-125 451.4 417 54.0
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 5.3e-123 445.3 428 51.9
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.1e-117 427.6 417 51.8
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.2e-108 396.7 314 63.7
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 8.5e-105 384.8 278 69.4
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.4e-102 377.5 318 58.5
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.8e-100 369.0 296 62.8
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.3e-94 350.1 282 64.9
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.5e-80 304.3 183 72.1
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 2.9e-73 280.0 374 43.3
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 4.2e-72 276.2 476 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 2.2e-68 263.8 229 52.8
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.7e-60 237.7 119 100.0
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 7.0e-59 232.3 582 30.2
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 5.0e-57 226.1 422 37.2
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 5.8e-53 212.6 247 49.8
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.3e-48 196.8 129 75.2
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.1e-47 194.1 210 50.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 6.2e-47 192.6 148 69.6
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.5e-40 171.4 117 72.6
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 9.9e-29 132.1 123 61.0
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.9e-28 130.6 143 52.4
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.4e-27 128.3 256 39.1
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 9.0e-22 109.0 107 49.5
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 8.7e-17 92.4 60 70.0
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 1.7e-12 78.2 107 44.9
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.2e-10 72.0 72 56.9
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 3.3e-08 63.9 39 71.8


User provided reference genes

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