Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 4.1e-298 1027.3 525 100.0
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 2.4e-234 815.5 539 75.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 4.3e-231 804.7 539 75.3
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.6e-230 802.7 539 75.1
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 3.1e-229 798.5 540 76.1
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 6.8e-229 797.3 540 75.7
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 6.8e-229 797.3 540 75.7
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 3.4e-228 795.0 539 75.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 9.3e-226 786.9 542 73.4
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.9e-223 779.2 542 72.0
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.1e-221 771.9 540 72.4
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 6.6e-216 754.2 540 71.9
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 5.3e-213 744.6 546 69.6
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.5e-212 743.0 546 69.4
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 8.4e-211 737.3 538 71.4
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 7.1e-210 734.2 538 71.0
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 2.3e-208 729.2 541 69.7
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.5e-207 725.7 537 70.4
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 3.3e-207 725.3 541 69.5
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 9.6e-207 723.8 538 70.4
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.1e-205 718.8 536 69.0
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.0e-205 718.4 538 69.0
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 6.9e-205 717.6 538 69.1
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.6e-204 715.7 543 68.3
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 4.5e-204 714.9 539 68.3
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 2.2e-203 712.6 538 69.0
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 8.4e-203 710.7 584 65.2
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.9e-202 709.5 543 67.8
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 1.9e-202 709.5 539 68.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.9e-202 709.5 538 69.1
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 4.2e-202 708.4 585 65.1
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 5.5e-202 708.0 543 67.2
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.2e-201 706.8 539 68.5
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 3.5e-201 705.3 583 64.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 4.6e-201 704.9 545 67.9
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 7.9e-201 704.1 542 67.3
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 8.7e-200 700.7 532 67.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.5e-199 699.9 539 68.1
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 9.6e-199 697.2 539 67.9
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.6e-198 696.4 539 67.5
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 2.1e-198 696.0 540 67.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.1e-198 696.0 538 68.2
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.8e-198 695.7 540 66.5
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.7e-198 695.3 538 66.9
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 8.2e-198 694.1 544 67.1
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.4e-197 693.3 544 65.6
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 9.0e-197 690.6 541 65.8
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 9.0e-197 690.6 537 67.0
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.0e-196 689.5 543 66.7
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.6e-196 689.1 547 66.2
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 7.6e-196 687.6 546 66.3
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 5.0e-195 684.9 546 65.9
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.4e-194 683.3 540 66.3
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 1.9e-194 682.9 525 66.9
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.2e-194 682.2 543 65.9
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.6e-193 679.9 543 65.4
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.1e-193 679.5 524 67.6
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 3.5e-193 678.7 525 66.9
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.9e-192 675.2 542 64.2
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 6.7e-192 674.5 541 64.9
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.1e-191 673.7 544 64.9
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.6e-190 669.8 541 64.5
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.6e-190 669.8 541 64.9
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.7e-190 668.7 541 64.7
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 4.5e-188 661.8 524 65.6
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 7.7e-188 661.0 542 61.3
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 8.5e-187 657.5 531 65.2
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-186 656.8 583 61.2
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-186 656.8 583 61.2
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.2e-186 655.6 583 60.4
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 5.5e-186 654.8 532 64.7
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.7e-185 652.5 583 60.9
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.9e-185 651.0 583 59.9
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.7e-182 643.3 538 61.0
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 6.3e-182 641.3 537 60.9
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.1e-181 640.6 514 66.1
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.8e-181 639.8 536 61.0
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.1e-181 638.6 584 59.4
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 9.1e-181 637.5 534 60.3
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 1.2e-180 637.1 542 60.1
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-180 636.7 534 60.3
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.0e-180 636.3 530 62.1
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 2.6e-180 636.0 523 62.3
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 4.5e-180 635.2 544 62.3
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 7.7e-180 634.4 535 59.8
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 8.5e-179 630.9 535 59.6
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.1e-178 630.6 535 59.6
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.1e-178 630.6 532 63.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.9e-178 629.8 411 76.4
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 5.5e-178 628.2 548 60.9
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 3.6e-177 625.5 543 59.3
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.3e-176 622.9 544 61.8
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 8.2e-174 614.4 571 59.5
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.1e-173 614.0 536 59.3
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.8e-173 613.2 535 60.6
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 5.5e-170 601.7 538 58.2
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 9.4e-170 600.9 535 59.4
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 2.7e-169 599.4 537 58.3
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.4e-160 570.5 551 55.4
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.8e-160 570.1 551 56.1
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 5.9e-148 528.5 426 65.3
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.5e-146 523.9 420 65.5
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 7.8e-140 501.5 528 52.8
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 8.9e-136 488.0 411 60.6
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.0e-135 486.9 474 54.2
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 5.2e-128 462.2 483 54.5
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 7.8e-124 448.4 524 50.6
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 3.9e-123 446.0 356 62.6
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 7.6e-119 431.8 454 51.8
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 3.8e-118 429.5 319 69.3
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.1e-117 427.9 618 39.6
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 4.1e-117 426.0 409 58.2
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 9.9e-111 404.8 353 59.5
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.7e-102 377.5 317 64.0
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 2.1e-100 370.5 424 51.2
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 4.3e-98 362.8 503 39.6
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.2e-95 354.8 506 41.1
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.1e-93 348.2 519 39.9
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 2.1e-92 344.0 488 43.6
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.0e-91 341.7 488 43.2
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 3.9e-91 339.7 263 64.6
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 1.6e-89 334.3 347 55.6
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.7e-86 324.3 477 39.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 6.1e-68 262.7 274 55.1
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.8e-65 253.8 215 63.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 4.8e-65 253.1 211 64.0
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 9.4e-53 212.2 167 64.1
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 1.2e-42 178.7 113 80.5
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.8e-40 171.4 123 71.5
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 5.9e-39 166.4 207 51.7
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 5.9e-39 166.4 569 26.2
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 7.7e-39 166.0 165 58.2
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 3.0e-35 154.1 436 32.1
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-33 148.3 103 68.9
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 4.9e-33 146.7 559 27.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 7.8e-31 139.4 111 63.1
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.9e-29 134.8 88 71.6
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-28 132.1 102 62.7
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.6e-28 131.7 95 66.3
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 3.6e-28 130.6 90 73.3
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.0e-27 129.0 115 57.4
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 3.0e-27 127.5 496 26.0
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.2e-23 115.5 88 68.2
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.1e-20 104.8 239 32.2
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 3.3e-13 80.9 556 23.0
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 7.3e-13 79.7 121 43.8
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-10 72.4 83 50.6
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.7e-09 68.6 85 42.4
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-08 62.8 126 38.1
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.1e-07 61.6 496 22.6
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 3.9e-06 57.4 49 59.2


User provided reference genes

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