Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 0.0e+00 1947.9 993 100.0
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1269.2 1138 62.1
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1195.6 1137 60.4
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1187.2 1113 60.1
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1139.4 1121 57.9
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1127.9 1118 58.8
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 0.0e+00 1125.2 1096 59.2
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1122.8 1130 57.3
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1115.5 1122 56.7
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1114.8 1123 57.4
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1112.4 1113 56.7
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1110.5 1102 57.5
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1109.7 1113 56.6
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1105.9 1124 56.6
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1101.3 1123 56.4
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1087.4 1101 56.7
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 0.0e+00 1087.4 1104 56.9
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1084.3 1125 55.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1083.6 1142 55.3
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 1076.6 1123 56.2
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.5e-309 1066.2 1147 53.5
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.9e-309 1065.8 1145 54.9
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 4.3e-309 1064.7 1121 54.8
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 4.3e-309 1064.7 1095 56.6
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 2.0e-306 1055.8 1058 57.8
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 2.6e-306 1055.4 1105 54.5
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 2.9e-305 1052.0 1131 55.2
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 2.9e-305 1052.0 1107 54.5
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 2.8e-300 1035.4 1101 54.3
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.7e-297 1026.2 1104 53.5
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 8.5e-297 1023.8 1110 54.4
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 8.5e-297 1023.8 1106 54.2
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.1e-296 1023.5 1064 55.0
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 9.4e-296 1020.4 1103 53.6
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.2e-295 1020.0 1144 53.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 2.3e-294 1015.8 1103 53.8
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 3.0e-294 1015.4 1109 53.3
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 6.7e-294 1014.2 1115 53.1
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 9.7e-293 1010.4 1108 53.9
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 5.9e-290 1001.1 1112 51.7
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.7e-289 999.6 1084 55.0
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 2.2e-289 999.2 1128 53.8
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 8.0e-287 990.7 1116 51.3
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 8.8e-286 987.3 1083 52.6
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 2.2e-284 982.6 994 56.7
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 4.8e-284 981.5 1137 52.9
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 9.1e-283 977.2 1108 51.1
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.0e-282 976.1 1113 50.1
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.3e-281 973.4 1137 50.7
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 1.3e-281 973.4 1116 51.5
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 3.8e-281 971.8 1114 50.4
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 5.5e-280 968.0 1114 50.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 6.1e-279 964.5 986 57.1
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.4e-278 963.4 1189 49.3
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 8.8e-278 960.7 1127 50.5
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.9e-272 943.0 1138 50.5
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 7.3e-272 941.0 1077 51.4
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 3.6e-271 938.7 1033 52.4
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 4.4e-269 931.8 1106 49.8
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.2e-268 929.5 1117 49.9
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 8.3e-268 927.5 1087 52.3
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 3.2e-267 925.6 1119 48.7
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 7.8e-266 921.0 1111 49.6
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.9e-265 918.7 1045 50.6
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 5.0e-265 918.3 1083 50.5
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 5.0e-265 918.3 1123 49.1
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.6e-264 914.8 1049 50.9
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 9.5e-264 914.1 1113 49.8
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 1.6e-263 913.3 1052 51.2
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.8e-263 912.5 1042 50.7
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 4.7e-263 911.8 1159 48.9
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.8e-262 909.8 1106 49.5
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.1e-262 909.1 956 55.9
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.5e-261 906.7 1041 50.3
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 1.9e-259 899.8 1047 50.9
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 3.2e-259 899.0 1049 50.5
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 3.2e-259 899.0 1049 50.5
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 4.1e-259 898.7 1051 50.0
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 5.4e-259 898.3 1049 50.8
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 5.4e-259 898.3 941 56.5
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 4.6e-258 895.2 1049 50.3
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.0e-257 894.0 1049 49.9
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 2.3e-257 892.9 1112 48.5
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 2.8e-255 885.9 1102 47.8
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.6e-255 885.6 1117 48.4
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.1e-254 884.0 960 53.1
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 4.6e-250 868.6 1109 47.0
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.0e-249 865.9 1090 47.6
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 5.6e-248 861.7 1146 47.1
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 7.3e-248 861.3 883 56.5
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 3.8e-244 849.0 1086 47.4
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 8.4e-244 847.8 1089 47.8
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 1.9e-243 846.7 1088 47.2
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.9e-243 846.7 1088 47.1
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.6e-242 843.6 1136 46.2
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 6.0e-242 841.6 1042 47.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 7.8e-242 841.3 1073 48.0
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 1.0e-241 840.9 1086 47.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 3.6e-239 832.4 1086 47.1
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 5.8e-237 825.1 1099 46.0
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 6.4e-236 821.6 1118 46.2
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.1e-235 820.8 874 56.4
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.4e-235 820.5 1102 46.3
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 3.2e-235 819.3 1031 47.3
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 7.6e-229 798.1 849 55.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.9e-227 793.5 904 52.2
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.3e-223 780.8 744 60.3
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 9.3e-219 764.6 1116 41.6
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 3.2e-211 739.6 940 49.1
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 4.6e-210 735.7 1072 42.7
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-206 724.2 717 59.1
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 4.2e-203 712.6 774 54.0
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 6.1e-202 708.8 758 54.4
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.5e-200 703.4 1093 41.7
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 4.8e-199 699.1 925 47.6
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.0e-196 691.4 672 58.8
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.0e-196 691.4 672 58.6
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 6.7e-193 678.7 787 50.1
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.6e-192 676.8 679 57.0
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 5.3e-190 669.1 502 70.3
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.3e-184 649.8 565 63.0
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.7e-175 619.8 443 72.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 6.1e-170 602.4 1093 38.5
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 6.1e-162 575.9 637 53.1
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 2.4e-158 563.9 713 50.8
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 3.1e-158 563.5 655 53.0
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.6e-133 481.5 920 39.3
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.9e-118 431.4 591 46.9
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.9e-118 431.4 591 46.9
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 8.7e-116 422.5 743 39.3
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.9e-108 397.1 268 78.0
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.9e-108 397.1 268 78.0
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.1e-105 389.0 677 37.5
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.1e-101 374.8 418 52.6
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 2.0e-88 331.6 327 52.9
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 1.8e-76 292.0 579 40.4
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.5e-70 270.4 170 81.8
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 9.7e-67 259.6 661 32.4
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.2e-56 226.1 557 31.6
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 2.3e-47 195.3 578 28.4
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 2.2e-42 178.7 130 64.6
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.3e-39 169.5 157 61.8
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 2.1e-37 162.2 172 51.2
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 4.7e-37 161.0 91 87.9
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 2.9e-34 151.8 142 62.0
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 1.4e-33 149.4 91 78.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 1.3e-31 142.9 159 56.0
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 6.8e-20 104.0 305 31.1
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 9.9e-19 100.1 306 30.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 6.4e-18 97.4 67 65.7
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 8.3e-18 97.1 82 62.2
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 1.9e-14 85.9 114 42.1
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 5.2e-12 77.8 111 41.4
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 1.7e-10 72.8 120 39.2
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 2.2e-10 72.4 110 40.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 2.4e-09 68.9 162 35.2
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.1e-06 60.1 149 30.2
HPP92_016740 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.9e-06 59.3 52 48.1


User provided reference genes

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