Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 9.9e-209 729.9 386 100.0
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 9.5e-127 457.6 387 66.9
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 8.0e-126 454.5 350 72.9
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 7.5e-124 448.0 388 65.7
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 8.3e-123 444.5 388 65.2
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.4e-122 443.7 408 62.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 5.4e-122 441.8 408 61.5
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 2.5e-119 433.0 386 64.2
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 7.5e-116 421.4 386 62.7
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.2e-114 416.0 382 61.8
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 4.6e-113 412.1 418 57.2
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 1.0e-112 411.0 387 59.4
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.1e-110 403.3 389 61.4
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 2.1e-110 403.3 399 59.4
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 2.8e-110 402.9 386 58.8
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 6.2e-110 401.7 387 61.0
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 6.8e-109 398.3 386 59.3
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 3.7e-107 392.5 396 59.3
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 8.3e-107 391.3 384 60.2
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 1.4e-106 390.6 386 60.1
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 2.4e-106 389.8 387 57.6
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 9.2e-106 387.9 383 58.0
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.2e-105 387.5 391 57.3
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.3e-104 384.0 392 57.7
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 3.3e-103 379.4 390 58.5
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 5.2e-101 372.1 414 54.6
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 2.6e-100 369.8 406 55.2
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 7.5e-100 368.2 372 58.1
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.2e-99 366.7 410 53.7
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 8.3e-99 364.8 392 54.8
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 8.3e-99 364.8 388 55.7
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 7.1e-98 361.7 386 56.2
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.3e-96 357.5 357 58.3
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 1.7e-96 357.1 407 53.3
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 1.9e-95 353.6 397 55.4
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 4.3e-95 352.4 402 53.5
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.2e-94 350.9 393 53.7
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 1.6e-94 350.5 381 53.3
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.8e-94 349.7 406 52.5
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 3.6e-94 349.4 309 62.8
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 2.4e-93 346.7 402 51.5
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 2.0e-92 343.6 382 55.5
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.6e-92 343.2 342 61.4
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 7.6e-92 341.7 413 52.3
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.3e-91 340.9 382 53.1
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 2.2e-91 340.1 347 59.1
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 3.8e-91 339.3 397 51.9
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.6e-89 334.0 398 52.3
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 2.7e-89 333.2 383 52.5
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.5e-89 332.8 409 50.4
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 6.0e-89 332.0 408 50.2
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.3e-88 330.9 275 68.0
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 5.1e-88 328.9 389 51.7
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.9e-87 327.0 404 49.5
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 5.6e-87 325.5 434 49.3
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.2e-86 324.3 347 55.3
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 1.2e-86 324.3 359 54.9
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 2.1e-86 323.6 404 49.5
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 2.8e-86 323.2 421 48.0
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 3.6e-86 322.8 411 49.1
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 4.7e-86 322.4 357 52.4
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 8.1e-86 321.6 396 52.5
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 1.1e-85 321.2 218 76.6
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 2.2e-83 313.5 341 52.5
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 2.9e-83 313.2 391 49.4
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 9.3e-82 308.1 359 51.8
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 1.0e-80 304.7 330 57.3
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.3e-80 304.3 435 46.2
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 1.7e-80 303.9 406 46.6
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 5.1e-80 302.4 381 51.2
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 5.1e-80 302.4 387 48.1
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 1.9e-79 300.4 215 75.8
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.9e-79 300.4 388 50.5
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 8.1e-78 295.0 357 50.4
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.1e-77 294.7 258 60.9
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 9.0e-77 291.6 393 46.6
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 7.6e-76 288.5 420 45.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 9.9e-76 288.1 314 53.8
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.9e-75 286.6 356 49.7
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 4.9e-75 285.8 446 44.4
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.4e-75 285.4 441 44.2
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.1e-74 284.6 389 46.3
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 5.4e-74 282.3 297 53.2
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 5.4e-74 282.3 346 50.0
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 2.7e-73 280.0 396 44.7
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 3.0e-72 276.6 392 45.4
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.1e-71 274.6 250 59.2
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 3.3e-71 273.1 295 53.6
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 7.4e-71 271.9 444 42.3
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 6.2e-70 268.9 384 45.1
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 6.2e-70 268.9 436 42.0
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.2e-67 260.4 396 46.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.9e-66 257.3 382 43.5
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 9.3e-66 255.0 404 43.8
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 6.0e-65 252.3 372 46.5
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 7.9e-65 251.9 390 43.3
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.0e-64 251.5 349 46.4
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 5.6e-63 245.7 249 55.4
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 5.6e-63 245.7 249 55.4
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 5.6e-63 245.7 249 55.4
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 9.6e-63 245.0 249 55.8
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 3.7e-62 243.0 307 48.2
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 4.0e-61 239.6 293 49.8
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 4.0e-61 239.6 254 55.1
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.2e-60 238.0 290 50.0
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 3.4e-60 236.5 183 71.0
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 8.4e-59 231.9 183 67.2
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 1.6e-57 227.6 182 66.5
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 1.3e-56 224.6 278 50.4
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.9e-55 220.7 353 43.6
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 4.3e-55 219.5 391 41.9
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 4.3e-55 219.5 379 38.3
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 2.4e-53 213.8 218 56.0
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 6.9e-53 212.2 375 42.7
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 5.9e-52 209.1 285 47.0
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 2.9e-51 206.8 423 35.5
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 3.8e-51 206.5 255 49.0
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 1.9e-50 204.1 239 48.1
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 9.4e-50 201.8 391 39.1
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 9.4e-50 201.8 278 47.1
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 5.1e-48 196.1 197 56.9
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 5.7e-47 192.6 342 40.1
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 1.4e-40 171.4 239 51.0
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.4e-40 171.4 245 41.6
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 9.7e-39 165.2 175 54.9
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 2.2e-38 164.1 278 44.2
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 2.6e-36 157.1 121 69.4
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 1.9e-34 151.0 214 46.7
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 1.0e-32 145.2 224 42.9
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 2.3e-32 144.1 85 82.4
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.4e-29 134.8 183 44.8
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 1.0e-27 128.6 197 42.6
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.7e-27 127.9 94 71.3
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 1.1e-26 125.2 117 59.0
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 2.3e-24 117.5 114 57.9
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 3.0e-24 117.1 123 55.3
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 3.0e-24 117.1 123 55.3
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 8.8e-24 115.5 84 67.9
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 1.5e-23 114.8 245 38.4
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 2.6e-23 114.0 285 34.4
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 3.3e-23 113.6 81 65.4
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 5.3e-21 106.3 86 64.0
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.7e-17 94.0 55 83.6
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 8.8e-16 89.0 83 59.0
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.7e-14 84.7 192 33.3
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 2.2e-14 84.3 208 30.8
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 1.1e-13 82.0 125 37.6
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 1.4e-13 81.6 98 49.0
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 4.1e-13 80.1 49 77.6
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 1.5e-10 71.6 114 39.5
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 4.7e-09 66.6 83 42.2
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 9.8e-07 58.9 150 31.3
MCO11G525 Micromonas commoda HOM05D004411 ORTHO05D005569 8.3e-06 55.8 161 27.3


User provided reference genes

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