Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 0.0e+00 1196.4 672 100.0
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.1e-308 1062.8 668 84.9
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.2e-307 1059.3 669 84.8
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.0e-302 1042.0 668 83.4
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 3.5e-302 1041.2 669 86.1
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.0e-301 1038.1 665 85.7
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.0e-301 1038.1 667 85.5
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 2.5e-300 1035.0 667 85.8
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 3.3e-300 1034.6 668 83.5
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 4.3e-300 1034.2 670 83.4
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.3e-300 1034.2 665 85.4
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 7.3e-300 1033.5 665 85.4
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.2e-299 1032.7 668 84.1
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.6e-299 1032.3 665 85.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.6e-299 1031.2 668 82.8
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.4e-298 1029.2 668 83.5
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 3.1e-298 1028.1 653 84.2
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.2e-297 1026.2 671 84.1
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.4e-297 1024.2 668 82.6
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 4.4e-297 1024.2 653 85.1
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 5.8e-297 1023.8 667 84.9
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.3e-296 1022.7 667 83.1
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 1.7e-296 1022.3 666 81.7
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.7e-293 1012.3 671 82.4
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 3.0e-293 1011.5 669 83.6
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 3.9e-293 1011.1 668 82.9
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.9e-293 1011.1 667 82.0
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.5e-292 1009.2 671 83.2
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 2.5e-292 1008.4 668 80.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 3.3e-292 1008.1 667 82.5
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 5.6e-292 1007.3 665 81.8
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 7.3e-292 1006.9 665 82.1
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 9.5e-292 1006.5 668 81.7
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.6e-291 1005.7 731 75.1
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.8e-291 1005.0 731 75.1
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 3.6e-291 1004.6 668 80.1
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 6.2e-291 1003.8 671 81.7
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 6.2e-291 1003.8 668 81.7
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 2.3e-290 1001.9 649 82.9
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 4.0e-290 1001.1 664 80.7
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 4.0e-290 1001.1 672 81.0
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.2e-289 999.6 670 80.6
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.2e-289 999.6 649 83.1
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.6e-289 998.4 668 81.0
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 9.8e-289 996.5 668 81.1
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.3e-288 996.1 664 80.1
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 4.9e-288 994.2 667 82.5
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 9.2e-287 989.9 667 81.0
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 6.0e-286 987.3 663 79.9
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.0e-285 986.5 665 82.1
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 2.5e-284 981.9 669 78.8
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 3.3e-284 981.5 668 79.9
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.3e-284 981.5 668 80.4
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.1e-283 978.8 668 79.8
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.8e-283 978.4 650 81.7
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 4.7e-283 977.6 668 80.1
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 6.2e-283 977.2 671 80.6
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.8e-282 973.8 668 81.1
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 8.9e-282 973.4 668 79.8
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 2.0e-281 972.2 670 80.0
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 2.6e-281 971.8 667 80.4
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 3.4e-281 971.5 672 81.1
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 5.8e-281 970.7 664 79.2
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.9e-280 968.4 714 75.9
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 4.9e-280 967.6 714 75.8
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 6.4e-280 967.2 666 80.0
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 8.4e-280 966.8 666 78.4
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 1.4e-279 966.1 669 79.7
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.9e-279 965.7 666 79.9
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.6e-278 962.6 664 78.3
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 6.0e-278 960.7 663 79.2
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 2.5e-276 955.3 663 79.5
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.1e-274 949.9 717 74.5
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.2e-273 946.4 667 79.0
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 5.8e-273 944.1 663 78.3
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.2e-272 942.2 663 78.1
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 4.9e-272 941.0 656 77.3
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 6.4e-272 940.6 669 75.9
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 2.4e-271 938.7 663 78.0
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 3.5e-270 934.9 667 78.4
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 8.7e-269 930.2 668 77.5
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.1e-268 929.9 653 77.9
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 2.5e-268 928.7 667 77.2
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.6e-267 926.0 663 77.1
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.1e-266 923.3 667 75.6
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.2e-265 919.8 665 75.6
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.5e-265 919.5 672 76.8
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.5e-265 919.5 672 76.8
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 2.6e-265 918.7 677 76.2
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.4e-263 912.9 668 77.1
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.4e-263 912.9 621 81.6
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.2e-262 909.8 694 73.6
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 2.7e-262 908.7 668 77.2
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.9e-261 904.8 714 71.4
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-260 902.9 671 76.9
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 3.3e-260 901.7 666 72.4
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 3.6e-259 898.3 669 75.9
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.1e-258 896.7 667 75.3
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.2e-257 893.3 559 86.6
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.5e-257 892.9 668 74.3
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.6e-257 892.1 667 74.4
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.3e-256 889.8 1018 54.5
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.2e-254 883.2 668 75.7
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 6.2e-251 870.9 717 68.9
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 6.2e-251 870.9 601 80.9
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 4.2e-247 858.2 656 75.0
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.6e-246 856.3 632 74.7
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 4.6e-246 854.7 670 73.6
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.7e-245 850.5 700 68.7
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.1e-242 842.0 650 73.4
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.7e-237 823.9 722 66.1
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.5e-236 823.2 651 71.6
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.4e-221 773.5 703 67.1
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-213 746.9 650 64.5
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 4.0e-213 745.3 657 63.6
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.7e-208 729.9 652 65.2
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.1e-207 727.2 654 62.2
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.2e-206 723.8 536 75.6
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.7e-161 573.2 366 82.5
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 3.9e-160 569.3 687 50.4
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.9e-159 567.0 384 83.3
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 9.6e-159 564.7 408 78.9
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.0e-136 491.5 346 74.6
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 4.0e-133 479.6 567 54.0
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.0e-107 395.2 360 65.0
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 4.7e-89 333.2 485 47.2
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.4e-85 320.9 494 46.4
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 7.5e-79 299.3 704 33.1
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 6.1e-73 279.6 258 64.3
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.5e-50 204.5 185 63.2
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.3e-50 204.1 545 33.2
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.2e-49 202.2 760 29.9
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 4.9e-46 190.3 111 83.8
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.2e-45 186.0 141 70.2
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 2.1e-44 184.9 109 85.3
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.6e-39 166.4 94 88.3
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.3e-27 129.0 604 25.3
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 8.7e-27 126.3 665 24.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.4e-24 118.2 91 73.6
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 9.6e-18 96.3 71 71.8
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 4.8e-17 94.0 705 22.4
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 9.3e-13 79.7 109 52.3
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 1.1e-10 72.8 43 76.7
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 1.3e-09 69.3 50 74.0
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.6e-09 68.9 51 66.7
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 4.1e-08 64.3 82 48.8
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 2.2e-06 58.5 82 47.6
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 6.5e-06 57.0 244 21.3
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 8.5e-06 56.6 28 89.3


User provided reference genes

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