Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008180001 Vitis vinifera HOM05D003462 ORTHO05D003946 1.1e-175 619.8 303 100.0
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 1.8e-133 479.6 256 88.7
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 2.9e-131 472.2 256 87.5
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 5.0e-131 471.5 256 88.3
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 1.4e-130 469.9 256 86.7
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 1.9e-130 469.5 300 78.0
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 4.2e-130 468.4 256 86.7
Dinv36836 Davidia involucrata HOM05D003462 ORTHO05D003946 5.5e-130 468.0 253 87.7
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 1.6e-129 466.5 256 87.1
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 1.8e-128 463.0 255 86.7
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.0e-128 462.2 253 86.2
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 3.0e-128 462.2 256 87.1
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 3.9e-128 461.8 256 85.2
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 5.1e-128 461.5 271 82.3
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 8.8e-128 460.7 253 85.8
Cfa017729 Carpinus fangiana HOM05D003462 ORTHO05D003946 2.0e-127 459.5 255 85.1
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 5.7e-127 458.0 255 85.5
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 3.7e-126 455.3 256 85.5
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 4.8e-126 454.9 255 84.3
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 8.2e-126 454.1 257 84.4
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.4e-125 452.6 253 84.6
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 4.1e-125 451.8 253 83.4
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 5.3e-125 451.4 253 83.0
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 5.3e-125 451.4 254 83.5
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 1.2e-124 450.3 255 83.5
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.5e-124 449.9 255 83.1
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 2.6e-124 449.1 253 83.0
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 1.3e-123 446.8 253 85.0
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 2.2e-123 446.0 256 81.6
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 2.9e-123 445.7 253 83.4
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 5.0e-123 444.9 253 80.6
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 5.0e-123 444.9 253 83.4
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 1.9e-122 443.0 256 81.2
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 2.5e-122 442.6 298 72.8
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 3.2e-122 442.2 256 81.2
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 3.2e-122 442.2 253 82.2
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 4.2e-122 441.8 298 73.2
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 4.2e-122 441.8 255 81.2
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 4.2e-122 441.8 255 83.1
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 5.5e-122 441.4 256 81.2
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 7.2e-122 441.0 253 81.4
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 7.2e-122 441.0 257 81.3
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 9.4e-122 440.7 253 82.2
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 1.2e-121 440.3 256 81.2
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 1.2e-121 440.3 269 78.8
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 1.6e-121 439.9 253 82.2
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 2.1e-121 439.5 256 80.1
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 2.7e-121 439.1 248 84.3
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 6.1e-121 438.0 268 77.2
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 6.1e-121 438.0 271 77.9
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 7.9e-121 437.6 253 81.8
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 7.9e-121 437.6 253 81.8
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 1.4e-120 436.8 253 79.8
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 2.3e-120 436.0 253 80.6
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 6.7e-120 434.5 253 80.6
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 3.3e-119 432.2 256 80.1
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 3.3e-119 432.2 256 80.1
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 3.3e-119 432.2 253 79.8
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 7.4e-119 431.0 253 79.4
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 9.7e-119 430.6 256 78.9
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 1.7e-118 429.9 256 79.3
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 8.2e-118 427.6 272 77.2
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 1.1e-117 427.2 256 77.3
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 1.4e-117 426.8 271 74.2
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 3.1e-117 425.6 270 76.7
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 7.0e-117 424.5 255 80.8
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 9.1e-117 424.1 255 79.2
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 1.2e-116 423.7 253 80.6
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 1.6e-116 423.3 270 76.3
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 1.6e-116 423.3 270 76.3
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 2.0e-116 422.9 255 80.4
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 2.6e-116 422.5 255 79.6
Oeu031925.1 Olea europaea HOM05D003462 ORTHO05D003946 5.9e-116 421.4 334 65.3
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 1.0e-115 420.6 255 78.8
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.7e-115 419.9 253 79.4
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.7e-115 419.9 295 69.8
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 1.7e-115 419.9 256 79.7
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 5.0e-115 418.3 254 78.0
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 5.0e-115 418.3 254 78.0
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 4.2e-114 415.2 264 76.5
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 5.5e-114 414.8 350 61.7
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 1.2e-113 413.7 256 75.8
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 3.6e-113 412.1 256 75.0
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 8.0e-113 411.0 223 85.2
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 8.0e-113 411.0 258 77.5
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 1.8e-112 409.8 253 77.9
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 3.0e-112 409.1 255 75.7
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 3.0e-112 409.1 272 72.4
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 6.7e-112 407.9 222 87.4
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 6.7e-112 407.9 248 77.0
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 2.6e-111 406.0 272 72.4
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 2.6e-111 406.0 275 70.5
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 5.7e-111 404.8 256 74.6
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 5.7e-111 404.8 255 74.5
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 9.7e-111 404.1 256 72.7
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 2.2e-110 402.9 251 74.5
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 4.8e-110 401.7 222 84.2
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 1.4e-109 400.2 265 70.9
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 1.8e-109 399.8 253 74.3
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 3.1e-109 399.1 256 73.4
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 4.1e-109 398.7 255 75.7
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 6.5e-107 391.3 255 74.9
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 1.5e-106 390.2 253 75.1
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 1.2e-105 387.1 254 71.7
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 1.2e-105 387.1 251 75.3
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 8.0e-105 384.4 255 69.4
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 4.0e-104 382.1 256 69.1
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 5.7e-103 378.3 253 75.9
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 5.7e-103 378.3 244 73.0
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 9.8e-103 377.5 257 69.6
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 1.7e-102 376.7 256 66.4
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 1.1e-101 374.0 236 77.1
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 1.8e-101 373.2 256 66.0
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 1.8e-101 373.2 290 63.4
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.5e-98 361.7 231 74.9
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 3.4e-95 352.4 236 69.5
CSS0003044 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.2e-94 349.7 199 82.4
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 4.9e-94 348.6 255 69.0
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 2.4e-93 346.3 254 62.6
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 4.5e-92 342.0 256 65.2
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 4.5e-92 342.0 293 62.1
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 2.3e-91 339.7 254 63.0
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 2.3e-91 339.7 254 63.0
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 4.9e-86 322.0 244 66.4
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 2.4e-85 319.7 251 59.0
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 5.4e-85 318.5 253 62.1
FvH4_5g13111 Fragaria vesca HOM05D003462 ORTHO05D003946 4.6e-84 315.5 255 64.7
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 4.4e-79 298.9 245 54.7
TPR.G1988 Trifolium pratense HOM05D003462 ORTHO05D003946 8.3e-78 294.7 239 60.3
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 1.6e-76 290.4 253 59.3
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 1.0e-75 287.7 266 52.6
unitig_749.g14105 Utricularia gibba HOM05D003462 ORTHO05D003946 1.1e-69 267.7 254 53.1
Oeu012971.1 Olea europaea HOM05D003462 ORTHO05D003946 4.0e-64 249.2 131 88.5
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 1.2e-63 247.7 236 50.4
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 4.6e-52 209.1 254 46.9
SEGI_21155 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 7.3e-50 201.8 204 50.5
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 8.1e-49 198.4 115 81.7
Medtr4g130360 Medicago truncatula HOM05D003462 ORTHO05D003946 3.4e-47 193.0 225 47.1
Glyma.05G017301 Glycine max HOM05D003462 ORTHO05D003946 6.2e-41 172.2 116 74.1
Medtr5g025810 Medicago truncatula HOM05D003462 ORTHO05D003946 3.1e-32 143.3 256 35.9
QL10p021440 Quercus lobata HOM05D003462 ORTHO05D003946 3.1e-32 143.3 102 64.7
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 4.0e-32 142.9 108 60.2
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 1.7e-30 137.5 170 47.1
Medtr4g114810 Medicago truncatula HOM05D003462 ORTHO05D003946 7.9e-28 128.6 251 35.5
Medtr5g083090 Medicago truncatula HOM05D003462 ORTHO05D003946 9.0e-24 115.2 187 40.6
Medtr5g082990 Medicago truncatula HOM05D003462 ORTHO05D003946 2.0e-23 114.0 135 44.4
Duzib205G0393 Durio zibethinus HOM05D003462 ORTHO05D003946 7.6e-23 112.1 60 90.0
RcHm_v2.0_Chr3g0495421 Rosa chinensis HOM05D003462 ORTHO05D003946 3.3e-18 96.7 60 75.0
Medtr4g123500 Medicago truncatula HOM05D003462 ORTHO05D003946 4.8e-17 92.8 209 29.7
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 3.8e-14 83.2 141 37.6
Medtr8g022470 Medicago truncatula HOM05D003462 ORTHO05D003946 1.1e-13 81.6 119 43.7
RcHm_v2.0_Chr6g0264351 Rosa chinensis HOM05D003462 ORTHO05D003946 5.1e-11 72.8 44 79.5
Medtr5g083100 Medicago truncatula HOM05D003462 ORTHO05D003946 8.8e-11 72.0 63 57.1
COL.COLO4_01124 Corchorus olitorius HOM05D003462 ORTHO05D003946 5.9e-07 59.3 144 30.6
RcHm_v2.0_Chr2g0152701 Rosa chinensis HOM05D003462 ORTHO05D003946 6.5e-06 55.8 28 89.3


User provided reference genes

Program Settings