Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 2.7e-179 632.1 369 100.0
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 9.1e-119 431.0 360 71.1
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 2.8e-104 382.9 343 69.1
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 3.7e-104 382.5 347 68.6
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 3.7e-104 382.5 345 64.3
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.4e-103 380.6 358 65.4
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 3.1e-103 379.4 348 67.5
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 9.1e-103 377.9 351 66.4
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 5.5e-100 368.6 347 66.0
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 2.1e-99 366.7 372 58.6
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.7e-99 366.3 355 64.2
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 3.6e-99 365.9 345 64.9
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 3.0e-98 362.8 322 68.9
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.2e-97 360.9 345 64.1
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 3.4e-97 359.4 344 66.6
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 7.5e-97 358.2 344 70.3
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.3e-96 357.5 351 58.7
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.2e-96 356.7 354 60.5
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.4e-95 354.0 342 67.3
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.5e-94 349.4 358 61.5
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 3.8e-93 345.9 342 67.0
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 5.5e-92 342.0 351 65.0
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.0e-91 338.2 345 58.3
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 8.0e-91 338.2 359 59.9
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 6.8e-90 335.1 343 65.0
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.2e-89 334.3 345 64.3
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 7.5e-89 331.6 349 60.2
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 2.8e-88 329.7 346 60.1
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.7e-88 329.3 354 56.5
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.8e-87 327.0 388 51.5
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.4e-87 326.6 354 57.6
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 5.4e-87 325.5 346 61.8
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 5.4e-87 325.5 325 62.8
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 1.2e-86 324.3 356 59.6
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.6e-86 323.9 347 61.4
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 2.0e-86 323.6 351 61.8
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.9e-86 322.0 348 62.1
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.0e-85 321.2 345 59.7
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 3.8e-85 319.3 340 66.8
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.1e-84 317.8 339 66.1
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.1e-84 317.8 319 60.5
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.5e-84 317.4 346 59.8
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.5e-84 316.6 347 62.8
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 4.2e-84 315.8 347 61.4
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.5e-84 315.5 348 55.2
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 5.5e-84 315.5 345 53.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 7.2e-84 315.1 347 62.0
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.6e-83 313.9 513 48.0
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.8e-83 313.2 340 65.9
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.8e-83 313.2 345 61.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 2.8e-83 313.2 345 53.6
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.0e-82 309.7 356 63.8
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 6.8e-82 308.5 341 64.5
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 6.8e-82 308.5 313 58.1
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 5.7e-81 305.4 342 56.1
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 5.7e-81 305.4 350 53.1
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 9.8e-81 304.7 350 54.6
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.8e-80 303.1 352 58.2
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.4e-79 300.8 368 52.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.2e-79 298.1 363 55.9
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 1.2e-78 297.7 342 55.8
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 5.9e-78 295.4 336 61.9
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.0e-77 294.7 343 56.3
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 8.6e-77 291.6 345 54.8
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 1.5e-76 290.8 345 50.1
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.5e-76 290.8 336 58.9
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 1.9e-76 290.4 351 51.9
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.8e-75 286.6 335 60.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.8e-75 286.6 352 55.7
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 2.8e-75 286.6 347 55.9
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 2.3e-74 283.5 346 53.2
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 1.3e-72 277.7 424 47.6
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.7e-72 277.3 344 59.0
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 5.4e-71 272.3 370 51.6
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.1e-68 264.6 257 70.4
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.1e-68 264.6 356 47.8
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 5.6e-68 262.3 297 60.9
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.2e-67 261.2 312 51.6
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 2.3e-66 256.9 264 64.0
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 5.2e-66 255.8 301 59.8
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 3.4e-65 253.1 340 48.8
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 3.4e-65 253.1 341 46.6
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 4.4e-65 252.7 351 47.9
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 5.8e-65 252.3 340 48.8
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 5.8e-65 252.3 293 58.0
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 9.8e-65 251.5 345 51.0
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 3.7e-64 249.6 351 46.2
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 8.3e-64 248.4 293 59.4
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 8.3e-64 248.4 331 51.7
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 9.2e-63 245.0 345 46.7
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 6.6e-61 238.8 345 49.6
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 2.5e-60 236.9 366 42.6
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 4.3e-60 236.1 251 60.6
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 4.3e-60 236.1 341 53.4
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 5.6e-60 235.7 345 45.8
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 7.3e-60 235.3 241 59.3
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 7.3e-60 235.3 341 49.3
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.4e-58 231.1 346 45.1
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 4.0e-58 229.6 321 53.3
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.5e-57 227.6 342 46.2
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.5e-57 227.6 354 44.1
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 3.4e-57 226.5 293 48.8
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 4.4e-57 226.1 271 59.8
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 7.6e-57 225.3 329 50.8
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.2e-56 223.8 344 43.3
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 2.4e-55 220.3 344 41.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.5e-54 216.5 254 56.3
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.3e-53 214.5 343 40.8
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.3e-53 214.5 343 40.8
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.2e-51 208.0 294 46.3
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.6e-51 206.5 354 39.3
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.2e-51 205.7 328 44.5
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 3.1e-50 203.4 340 47.9
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 6.0e-46 189.1 344 39.2
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 9.6e-44 181.8 344 36.9
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.3e-43 181.4 312 40.4
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.1e-42 178.3 341 37.5
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 4.0e-42 176.4 344 37.8
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.2e-41 174.9 298 39.6
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.7e-40 171.0 307 39.7
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 3.8e-40 169.9 302 38.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.6e-38 164.5 301 39.2
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.1e-36 158.3 119 69.7
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.3e-36 156.8 313 46.3
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.1e-35 154.1 301 35.2
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 5.3e-34 149.4 310 40.3
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.7e-32 144.4 186 50.5
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 5.4e-31 139.4 340 36.5
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 3.5e-30 136.7 243 38.7
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 3.9e-29 133.3 197 42.1
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.4e-26 124.8 95 68.4
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 9.0e-26 122.1 122 58.2
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 3.4e-25 120.2 349 38.7
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.0e-24 118.6 292 31.8
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 1.4e-23 114.8 198 47.0
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 5.5e-23 112.8 268 34.7
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.8e-19 100.5 100 54.0
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.4e-18 97.4 108 54.6
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 9.0e-18 95.5 77 63.6
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 7.6e-17 92.4 89 53.9
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 3.2e-15 87.0 95 52.6
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.1e-15 85.9 94 57.4
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 1.3e-13 81.6 83 55.4
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 1.3e-13 81.6 107 49.5
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.9e-12 77.8 117 41.9
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 6.9e-10 69.3 113 39.8
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 5.9e-09 66.2 312 29.2
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 7.7e-09 65.9 110 39.1


User provided reference genes

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