Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 6.6e-183 644.0 358 100.0
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 8.8e-119 431.0 358 71.2
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.8e-106 389.0 364 65.4
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.0e-102 376.7 363 63.6
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 3.7e-101 372.5 369 64.8
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.4e-100 369.8 350 64.6
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 3.1e-100 369.4 360 63.1
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 3.1e-100 369.4 355 63.7
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.0e-99 366.7 332 68.7
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 5.9e-99 365.2 369 63.4
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 5.9e-99 365.2 355 63.7
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.3e-98 363.2 359 62.1
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 5.0e-98 362.1 364 61.8
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.5e-97 359.8 361 61.8
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 3.3e-97 359.4 343 63.8
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 4.2e-97 359.0 362 62.2
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 5.5e-97 358.6 366 60.9
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 3.6e-96 355.9 328 64.0
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 6.1e-96 355.1 380 58.7
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.7e-93 347.1 334 62.9
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 9.2e-92 341.3 369 61.8
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.0e-91 340.1 363 59.8
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.5e-91 339.3 363 60.1
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 5.9e-91 338.6 364 59.3
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.3e-90 337.4 362 60.2
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 6.6e-90 335.1 357 60.2
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 8.6e-90 334.7 367 59.7
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 3.3e-89 332.8 369 58.8
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.5e-89 331.3 368 59.5
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 8.0e-88 328.2 376 58.5
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 2.6e-86 323.2 365 59.2
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 6.4e-85 318.5 357 59.4
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.4e-84 317.4 364 56.6
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.2e-83 314.3 363 55.9
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 2.7e-83 313.2 363 56.5
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.7e-83 313.2 366 57.4
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 2.3e-82 310.1 360 59.2
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 3.0e-82 309.7 354 55.4
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 3.9e-82 309.3 357 55.7
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.5e-81 307.4 370 55.4
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 5.6e-81 305.4 369 54.5
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 5.6e-81 305.4 367 56.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.1e-80 303.5 363 58.7
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 2.1e-80 303.5 369 54.5
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 2.8e-80 303.1 368 56.0
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 2.8e-80 303.1 363 58.4
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 2.8e-80 303.1 368 54.6
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 3.6e-80 302.8 360 54.4
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.7e-80 302.4 359 57.4
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 8.0e-80 301.6 341 56.9
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.4e-79 300.8 363 55.1
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.0e-78 297.0 355 55.2
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 5.8e-78 295.4 357 57.4
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.8e-78 294.7 364 52.7
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.3e-77 294.3 302 59.9
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.3e-77 294.3 368 56.5
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.7e-77 293.9 330 58.2
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 2.2e-77 293.5 390 51.8
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 4.9e-77 292.4 359 54.6
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 1.9e-76 290.4 368 54.9
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.4e-76 290.0 355 53.5
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.2e-76 289.7 359 53.8
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.1e-76 289.3 369 53.9
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 9.2e-76 288.1 359 55.7
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 2.1e-75 287.0 366 55.7
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.5e-75 286.2 358 53.4
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.3e-74 283.5 356 53.1
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 3.9e-74 282.7 332 53.9
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 8.6e-74 281.6 378 54.5
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 8.6e-74 281.6 350 53.7
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 2.5e-73 280.0 341 54.8
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 4.3e-73 279.3 369 53.1
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 4.3e-73 279.3 369 52.8
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-72 277.7 364 56.3
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.2e-72 277.7 338 56.2
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 8.1e-72 275.0 348 54.6
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.4e-71 274.2 368 52.7
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.5e-70 270.8 368 50.3
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 3.4e-70 269.6 397 48.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.7e-69 267.3 377 52.8
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.7e-69 267.3 328 54.6
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.7e-69 267.3 355 52.7
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 4.9e-69 265.8 360 50.6
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 6.4e-69 265.4 368 48.6
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 1.1e-68 264.6 371 51.5
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 9.2e-68 261.5 360 49.2
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 9.2e-68 261.5 323 51.7
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 9.2e-68 261.5 376 51.3
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.1e-67 260.4 346 52.6
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 3.5e-67 259.6 362 49.7
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 6.6e-66 255.4 374 49.2
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 1.1e-65 254.6 360 52.5
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.5e-65 253.4 385 47.0
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 9.5e-65 251.5 362 47.2
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 6.2e-64 248.8 356 49.7
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 2.4e-63 246.9 369 50.4
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 3.1e-63 246.5 358 51.7
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 3.1e-63 246.5 369 48.5
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 6.8e-63 245.4 367 50.7
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 2.0e-62 243.8 371 49.1
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 4.4e-62 242.7 360 49.7
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 7.6e-62 241.9 348 48.9
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 9.9e-62 241.5 356 47.8
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.9e-61 240.0 311 50.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 4.2e-60 236.1 388 46.9
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 3.5e-59 233.0 364 49.2
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 6.6e-58 228.8 376 48.7
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.6e-57 224.9 368 45.9
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.1e-55 221.5 293 51.9
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 9.0e-55 218.4 359 44.8
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 1.2e-54 218.0 259 55.2
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 3.4e-54 216.5 405 41.5
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 4.6e-51 206.1 323 47.1
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.9e-49 200.7 313 47.6
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 7.3e-49 198.7 334 44.0
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.3e-48 198.0 327 45.6
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 6.9e-47 192.2 332 42.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 2.0e-46 190.7 320 45.0
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 2.2e-45 187.2 398 39.7
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 2.9e-45 186.8 350 42.6
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 1.9e-44 184.1 327 45.6
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.9e-44 184.1 327 45.6
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.9e-44 184.1 327 45.6
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 3.2e-44 183.3 359 42.1
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 7.1e-44 182.2 334 43.1
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 9.3e-44 181.8 350 42.6
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 2.1e-43 180.6 335 41.5
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 2.7e-43 180.3 339 45.1
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.7e-43 180.3 356 42.1
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 3.5e-43 179.9 356 42.4
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 2.1e-40 170.6 248 48.8
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.8e-23 114.4 180 45.6
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 6.5e-21 105.9 447 29.8
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.0e-10 72.0 68 60.3
Potri.017G142966 Populus trichocarpa HOM05D005535 ORTHO05D006753 7.4e-09 65.9 65 60.0
CARHR276330 Cardamine hirsuta HOM05D005535 ORTHO05D018759 2.4e-07 60.8 193 33.2
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 7.0e-07 59.3 41 68.3
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.5e-06 58.2 70 42.9


User provided reference genes

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