Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.3e-36 154.5 74 100.0
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.8e-26 122.1 63 92.1
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.6e-25 118.2 63 88.9
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 2.1e-19 98.6 63 68.3
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 6.2e-19 97.1 62 72.6
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 8.1e-19 96.7 58 79.3
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 8.1e-19 96.7 65 72.3
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.1e-18 96.3 63 73.0
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.4e-18 95.1 61 75.4
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 4.0e-18 94.4 62 72.6
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 4.0e-18 94.4 62 74.2
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 5.3e-18 94.0 58 77.6
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 5.3e-18 94.0 61 73.8
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 6.9e-18 93.6 60 76.7
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.2e-17 92.8 59 72.9
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 1.5e-17 92.4 59 72.9
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 2.6e-17 91.7 61 70.5
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 3.4e-17 91.3 59 72.9
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 3.4e-17 91.3 61 68.9
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.4e-17 91.3 61 68.9
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 4.5e-17 90.9 61 68.9
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 7.6e-17 90.1 64 68.8
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 9.9e-17 89.7 63 69.8
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.3e-16 89.4 61 70.5
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.3e-16 89.4 69 65.2
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.3e-16 89.4 61 65.6
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 1.3e-16 89.4 61 72.1
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 1.7e-16 89.0 59 78.0
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 4.9e-16 87.4 65 66.2
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.4e-16 87.0 65 64.6
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 6.4e-16 87.0 61 67.2
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 6.4e-16 87.0 61 68.9
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 6.4e-16 87.0 63 66.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 6.4e-16 87.0 64 67.2
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 6.4e-16 87.0 61 65.6
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 6.4e-16 87.0 62 69.4
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 6.4e-16 87.0 62 69.4
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 8.4e-16 86.7 61 68.9
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.1e-15 86.3 62 72.6
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.4e-15 85.9 62 67.7
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.9e-15 85.5 61 67.2
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 1.9e-15 85.5 62 67.7
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 1.9e-15 85.5 61 63.9
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 2.4e-15 85.1 61 65.6
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 3.2e-15 84.7 62 66.1
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 3.2e-15 84.7 62 62.9
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 3.2e-15 84.7 62 64.5
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 3.2e-15 84.7 61 68.9
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 5.4e-15 84.0 62 66.1
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 5.4e-15 84.0 63 55.6
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 9.3e-15 83.2 62 61.3
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.2e-14 82.8 65 60.0
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.2e-14 82.8 65 61.5
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.2e-14 82.8 62 61.3
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.6e-14 82.4 62 64.5
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 1.6e-14 82.4 62 64.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 2.1e-14 82.0 59 67.8
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 2.7e-14 81.6 65 63.1
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 2.7e-14 81.6 62 64.5
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.7e-14 81.6 61 67.2
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 6.0e-14 80.5 60 68.3
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.8e-13 79.0 62 59.7
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 3.0e-13 78.2 65 56.9
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.0e-13 78.2 62 59.7
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 3.9e-13 77.8 62 62.9
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 3.9e-13 77.8 62 58.1
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.9e-13 77.8 67 56.7
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 6.7e-13 77.0 62 56.5
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 6.7e-13 77.0 62 62.9
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.7e-13 77.0 62 62.9
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.7e-13 77.0 62 62.9
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.7e-13 77.0 62 62.9
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.1e-12 76.3 65 56.9
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.5e-12 75.9 65 56.9
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.5e-12 75.9 62 56.5
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.5e-12 75.1 62 59.7
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 2.5e-12 75.1 62 59.7
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.5e-12 75.1 61 60.7
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 2.5e-12 75.1 61 60.7
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.5e-12 75.1 58 62.1
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.3e-12 74.7 60 63.3
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 3.3e-12 74.7 62 58.1
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 4.3e-12 74.3 65 55.4
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 4.3e-12 74.3 65 55.4
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 1.3e-11 72.8 61 60.7
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.3e-11 72.8 62 53.2
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 1.6e-11 72.4 62 58.1
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 2.1e-11 72.0 42 85.7
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 2.8e-11 71.6 62 56.5
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 3.7e-11 71.2 62 56.5
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 3.7e-11 71.2 59 59.3
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 8.1e-11 70.1 44 75.0
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 8.1e-11 70.1 63 57.1
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 1.4e-10 69.3 62 53.2
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.8e-10 68.9 60 55.0
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 5.3e-10 67.4 44 65.9
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.2e-09 66.2 45 71.1
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 3.4e-09 64.7 47 66.0
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 3.4e-09 64.7 59 54.2
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 5.8e-09 63.9 57 61.4
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 7.6e-09 63.5 87 41.4
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 4.9e-08 60.8 44 65.9
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.5e-07 58.5 59 49.2
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 3.2e-07 58.2 64 50.0
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 3.2e-07 58.2 46 58.7
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 3.2e-07 58.2 59 49.2
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 4.2e-07 57.8 64 48.4
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-06 56.2 48 58.3
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-06 56.2 48 58.3
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-06 56.2 48 58.3
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-06 56.2 48 58.3
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.5e-06 54.7 45 62.2
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.5e-06 54.7 45 62.2
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 3.5e-06 54.7 63 46.0


User provided reference genes

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