Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 0.0e+00 1321.2 648 100.0
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.1e-279 966.5 651 73.1
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.1e-279 966.5 651 73.4
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 4.1e-276 954.5 649 71.8
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 7.8e-275 950.3 650 71.4
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 7.8e-275 950.3 650 70.9
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 9.5e-273 943.3 678 69.3
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 2.3e-271 938.7 650 69.7
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.3e-271 938.7 651 71.4
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 6.8e-271 937.2 652 70.7
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.3e-269 932.9 651 70.5
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 8.4e-269 930.2 652 70.2
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 6.0e-267 924.1 647 69.6
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 8.1e-264 913.7 651 68.5
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 4.0e-263 911.4 656 68.1
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.1e-260 903.3 655 68.2
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 1.2e-259 899.8 652 67.9
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 2.1e-259 899.0 653 66.6
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 6.0e-259 897.5 653 66.0
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.0e-258 896.7 654 67.4
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.0e-258 895.2 652 68.1
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.5e-257 892.9 654 69.4
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 9.6e-257 890.2 658 67.6
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 9.6e-257 890.2 652 66.0
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 4.0e-255 884.8 651 67.0
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 7.6e-254 880.6 650 67.4
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 7.6e-254 880.6 650 65.5
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 9.9e-254 880.2 647 66.6
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.9e-253 878.6 651 66.8
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 8.4e-253 877.1 652 67.3
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.9e-252 875.9 651 66.4
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 3.2e-252 875.2 655 65.8
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.6e-251 871.3 625 67.5
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.6e-251 871.3 625 67.5
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 4.6e-251 871.3 652 65.5
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.3e-250 869.8 649 64.7
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.8e-250 869.4 650 65.1
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 3.9e-250 868.2 651 65.7
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.1e-249 866.7 652 66.3
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.9e-249 865.9 650 66.3
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 2.5e-249 865.5 655 66.6
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 5.6e-249 864.4 653 64.6
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 7.4e-249 864.0 647 64.9
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 7.4e-249 864.0 649 65.9
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 1.6e-248 862.8 652 65.5
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 2.1e-248 862.4 651 66.2
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.1e-248 862.4 650 64.5
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 2.1e-248 862.4 653 64.5
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 3.6e-248 861.7 656 65.9
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 8.1e-248 860.5 646 66.4
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.1e-247 860.1 652 65.2
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 3.1e-247 858.6 651 65.6
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 4.0e-247 858.2 650 66.2
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 5.3e-247 857.8 653 64.5
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 6.9e-247 857.4 653 65.4
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.5e-246 856.3 647 66.0
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 2.6e-246 855.5 653 65.1
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 3.4e-246 855.1 659 63.7
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 5.8e-246 854.4 655 65.3
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 1.7e-245 852.8 627 67.1
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.7e-245 852.8 654 64.2
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 2.2e-245 852.4 650 64.0
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.1e-244 850.1 648 65.1
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.9e-244 849.4 654 65.9
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 4.2e-244 848.2 653 64.6
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 9.3e-244 847.0 649 65.3
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 2.1e-243 845.9 654 64.4
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 2.1e-243 845.9 655 65.6
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 2.7e-243 845.5 614 68.9
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 4.6e-243 844.7 664 63.9
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.8e-242 842.8 620 66.1
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 3.0e-242 842.0 656 64.5
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 3.0e-242 842.0 646 63.8
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 3.0e-242 842.0 653 65.1
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.9e-241 839.3 651 63.1
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.3e-240 836.6 660 62.7
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 4.0e-239 831.6 665 62.9
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 6.5e-237 824.3 616 66.7
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 5.7e-233 811.2 538 71.9
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 2.9e-229 798.9 670 61.2
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.0e-222 776.2 649 59.2
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.5e-217 760.0 645 58.8
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 2.0e-217 759.6 651 59.8
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.1e-215 753.8 652 59.4
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 9.1e-215 750.7 575 66.1
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 7.2e-204 714.5 486 71.2
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 2.7e-203 712.6 648 56.3
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.3e-197 693.7 577 64.1
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.0e-194 682.2 590 57.8
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.4e-191 673.7 620 58.7
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.6e-187 660.2 507 63.9
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 3.8e-181 639.0 689 51.2
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 2.0e-174 616.7 661 50.7
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 9.5e-172 607.8 593 54.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.9e-151 540.4 475 57.9
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 3.5e-150 536.2 653 45.6
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.1e-140 504.6 645 45.0
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 1.4e-138 497.7 634 44.5
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.4e-138 497.7 542 51.3
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.2e-129 468.0 253 87.0
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 1.5e-116 424.5 386 54.1
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.0e-104 385.2 487 45.4
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 8.5e-104 382.1 359 54.0
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.5e-103 380.6 422 47.2
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 3.6e-102 376.7 654 38.5
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 5.9e-97 359.4 297 63.6
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 8.5e-96 355.5 394 48.7
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.4e-93 348.2 178 88.2
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.1e-82 312.0 197 75.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 3.1e-66 257.3 264 49.6
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.7e-56 224.9 170 65.3
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.3e-55 220.7 104 95.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 1.8e-53 214.9 106 88.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 2.3e-53 214.5 224 49.6
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 6.6e-40 169.9 495 30.7
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 3.4e-36 157.5 200 42.0
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.9e-35 154.5 156 54.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.8e-35 154.1 178 47.2
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 4.9e-35 153.7 137 58.4
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.5e-28 132.1 86 73.3
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.1e-26 125.9 58 89.7
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.0e-24 119.4 83 67.5
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 3.9e-24 117.5 83 69.9
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.6e-22 110.9 102 52.9
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.9e-18 98.6 44 93.2
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 3.9e-16 90.9 79 58.2
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 6.7e-16 90.1 79 58.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 8.7e-16 89.7 79 57.0
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 4.3e-15 87.4 79 55.7
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 4.3e-15 87.4 79 55.7
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 2.8e-14 84.7 79 55.7
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 2.2e-11 75.1 95 49.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 2.9e-11 74.7 93 47.3
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 4.9e-11 73.9 75 53.3
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 1.2e-09 69.3 99 44.4
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 1.1e-07 62.8 154 35.1
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 4.8e-06 57.4 98 33.7


User provided reference genes

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